Strain identifier

BacDive ID: 15163

Type strain: Yes

Species: Streptomyces flavovirens

Strain history: KCC S-0035 <-- T. Yamaguchi (IAM 0069) <-- MTHU 64 <-- S. A. Waksman IMRU 3320.

NCBI tax ID(s): 52258 (species)

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General

@ref: 9244

BacDive-ID: 15163

DSM-Number: 40062

keywords: 16S sequence, Bacteria, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces flavovirens DSM 40062 is a spore-forming, mesophilic bacterium that builds an aerial mycelium and produces antibiotic compounds.

NCBI tax id

  • NCBI tax id: 52258
  • Matching level: species

strain history

@refhistory
9244<- E.B. Shirling, ISP <- S.A. Waksman, IMRU
67770KCC S-0035 <-- T. Yamaguchi (IAM 0069) <-- MTHU 64 <-- S. A. Waksman IMRU 3320.

doi: 10.13145/bacdive15163.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces flavovirens
  • full scientific name: Streptomyces flavovirens (Waksman 1923) Waksman and Henrici 1948 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Actinomyces flavogriseus
    20215Actinomyces flavovirens
    20215Streptomyces nigrifaciens
    20215Streptomyces flavogriseus

@ref: 9244

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces flavovirens

full scientific name: Streptomyces flavovirens (Waksman 1923) Waksman and Henrici 1948 emend. Lanoot et al. 2005

type strain: yes

Morphology

colony morphology

@refcolony colorincubation periodmedium used
19397Yellow10-14 daysISP 2
19397Yellow10-14 daysISP 3
19397Yellow10-14 daysISP 4
19397Yellow10-14 daysISP 5

multicellular morphology

@refforms multicellular complexcomplex namecomplex colormedium name
19397yesAerial MyceliumWhiteISP 2
19397yesAerial MyceliumGreyISP 3
19397yesAerial MyceliumGreyISP 4
19397yesAerial MyceliumIvoryISP 5

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9244GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19397ISP 2yesName: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19397ISP 3yesName: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19397ISP 4yesName: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19397ISP 5yesName: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
9244STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf

culture temp

@refgrowthtypetemperaturerange
19397positiveoptimum30mesophilic
9244positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

  • @ref: 19397
  • spore description: Formation of spore chains: rectiflixibilis,spore surface: smooth
  • spore formation: yes

compound production

@refcompound
9244actinomycin-complex
20216Actinomycin complex

halophily

  • @ref: 19397
  • salt: NaCl
  • growth: positive
  • tested relation: maximum
  • concentration: 2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1939762968cellulose-
1939716634raffinose-
1939726546rhamnose+
1939728757fructose+
1939729864mannitol+
1939717268myo-inositol-
1939718222xylose+
1939717992sucrose-
1939722599arabinose+
1939717234glucose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
19397+---+-----+

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_135.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_102;97_109;98_120;99_135&stattab=map
  • Last taxonomy: Streptomyces
  • 16S sequence: DQ026635
  • Sequence Identity:
  • Total samples: 4030
  • soil counts: 2441
  • aquatic counts: 286
  • animal counts: 1009
  • plant counts: 294

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
92441Risk group (German classification)
193971Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 12771AB1841331473ena52258
20218Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3412AB1848321477ena52258
20218Streptomyces flavovirens 16S ribosomal RNA gene, partial sequenceU72171268ena52258
9244Streptomyces flavovirens strain NRRL B-2685 16S ribosomal RNA gene, partial sequenceDQ0266351495ena52258
67770Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3197AB1848271472ena52258
67770Streptomyces flavovirens gene for 16S rRNA, partial sequence, strain: NBRC 3716AB1848341472ena52258

External links

@ref: 9244

culture collection no.: DSM 40062, ATCC 19758, ATCC 3320, CBS 129.20, CBS 496.68, IFO 12771, IFO 3412, IMRU 3320, ISP 5062, JCM 4035, JCM 4578, KCC S-0035, NBRC 12771, NBRC 3412, NRRL B-1329, NRRL B-2685, RIA 1038, RIA 635, BCRC 13689, CBS 189.75, CBS 279.30, CCM 3243, CGMCC 4.0575, HAMBI 1007, HUT 6019, HUT 6053, ICMP 479, IFO 3197, IFO 3716, IMET 40280, LMG 20516, NBRC 3197, NBRC 3716, VKM Ac-1723, VTT E-052937, VTT E-82159

straininfo link

  • @ref: 84267
  • straininfo: 216643

literature

  • topic: Metabolism
  • Pubmed-ID: 24001323
  • title: Enzymatical and microbial degradation of cyclic dipeptides (diketopiperazines).
  • authors: Perzborn M, Syldatk C, Rudat J
  • journal: AMB Express
  • DOI: 10.1186/2191-0855-3-51
  • year: 2013

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9244Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40062)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40062
19397Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40062.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
84267Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID216643.1StrainInfo: A central database for resolving microbial strain identifiers