Streptomyces griseus (DSM 40395, ATCC 25497, CBS 105.72)

Name: Streptomyces griseus (DSM 40395, ATCC 25497, CBS 105.72)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 15146

Type strain

Culture col. no. DSM 40395 ATCC 25497 CBS 105.72 CBS 957.69 ETH 16833 17 more

NCBI tax ID(s) 1911 67263

Special Collections DSMZ JCM KCTC CIP Literature strains

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Streptomyces griseus DSM 40395 is an obligate aerobe, mesophilic, Gram-positive prokaryote that was isolated from potato scab.

Gram-positive rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 386989

ATCC 25497,IFO 13085,CIP 105279,DSM 40395,JCM 4226,JCM 4516,NRRL B-2555,CBS 105.27,CBS 957.69,CBS 105.72,KCTC 9144,NBRC 13085,CFBP 4549,ICMP 12543,BCRC 16231,CCRC 16231,CGMCC 4.1367,CGMCC 4.1774,LMG 20291,VTT E-072713,AS 4.1367

@ref 20215

Last LPSN update 2025-12-16 09:50:32

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces griseus

Full scientific name Streptomyces griseus (Krainsky 1914) Waksman and Henrici 1948 (Approved Lists 1980)

Synonyms (13)

"Actinomyces setonii"
Streptomyces setonii
"Actinomyces globisporus subsp. flavofuscus"
Streptomyces acrimycini
"Actinomyces fimicarius"
Streptomyces baarnensis
"Actinomyces acrimycini"
Streptomyces fimicarius
Streptomyces globisporus subsp. flavofuscus
"Actinomyces griseus"
Streptomyces caviscabies
Streptomyces flavofuscus
Streptomyces erumpens

BacDive ID	Other strains from **Streptomyces griseus** (109)	Type strain
105478	S. griseus STI43587(IMET), 66,
126364	S. griseus ST002336(HKI),
126365	S. griseus ST026775(HKI), GT20044038,
126366	S. griseus ST026777(HKI), GT20044039,
126367	S. griseus ST026800(HKI), GT20044041,
126368	S. griseus ST026804(HKI), GT20044042,
126369	S. griseus ST031102(HKI),
126370	S. griseus ST024024(HKI),
126371	S. griseus ST027957(HKI),
126372	S. griseus ST027970(HKI),
126373	S. griseus ST027979(HKI),
126374	S. griseus ST017058(HKI),
126375	S. griseus ST017087(HKI),
126376	S. griseus ST017138(HKI),
126377	S. griseus ST017695(HKI), BI 09120, CIBAID40685,
126378	S. griseus ST017896(HKI), CIBAID40722, BI 08837,
126379	S. griseus ST017898(HKI), CIBAID40723, BI 08838,
126380	S. griseus ST018316(HKI),
126381	S. griseus ST018318(HKI),
126382	S. griseus ST028635(HKI),
126383	S. griseus ST029373(HKI),
126384	S. griseus ST029419(HKI),
126385	S. griseus ST028162(HKI),
126386	S. griseus ST028163(HKI),
126387	S. griseus ST028179(HKI),
126388	S. griseus ST028185(HKI),
126389	S. griseus ST021338(HKI), BI 10455,
126390	S. griseus ST026884(HKI), GT20044029,
126391	S. griseus ST026885(HKI), GT20044030,
126392	S. griseus ST026906(HKI), GT20044032,
126393	S. griseus ST028664(HKI),
126394	S. griseus ST028721(HKI),
126395	S. griseus ST027001(HKI), GT20044035,
126396	S. griseus ST030489(HKI),
126397	S. griseus ST030519(HKI),
126398	S. griseus ST030536(HKI),
126399	S. griseus ST030658(HKI),
126400	S. griseus ST030112(HKI),
126401	S. griseus ST030126(HKI),
126402	S. griseus ST030151(HKI),
126403	S. griseus ST030153(HKI),
126404	S. griseus ST030155(HKI),
126405	S. griseus ST030156(HKI),
126406	S. griseus ST030140(HKI),
126407	S. griseus ST029920(HKI),
126408	S. griseus ST030081(HKI),
126409	S. griseus ST030105(HKI),
126410	S. griseus ST030113(HKI),
126411	S. griseus ST030117(HKI),
126412	S. griseus ST030123(HKI),
126413	S. griseus ST030152(HKI),
126414	S. griseus ST030159(HKI),
126415	S. griseus ST031029(HKI),
126416	S. griseus ST017899(HKI), BI 09025,
126417	S. griseus ST000669(HKI),
126418	S. griseus ST031583(HKI),
126419	S. griseus ST002115(HKI),
126420	S. griseus ST002126(HKI),
126421	S. griseus ST017137(HKI),
126422	S. griseus ST017756(HKI),
126423	S. griseus ST003024(HKI), BI 05914,
126424	S. griseus ST002113(HKI),
126425	S. griseus ST002114(HKI),
126426	S. griseus ST002116(HKI),
126427	S. griseus ST002117(HKI),
126428	S. griseus ST002118(HKI),
126429	S. griseus ST002119(HKI),
126430	S. griseus ST002120(HKI),
126431	S. griseus ST002121(HKI),
126432	S. griseus ST002123(HKI),
126433	S. griseus ST002124(HKI),
126434	S. griseus ST002125(HKI),
126435	S. griseus ST020151(HKI),
126436	S. griseus ST002351(HKI),
126437	S. griseus ST020719(HKI), BI 10041,
126438	S. griseus ST000580(HKI),
126439	S. griseus ST000620(HKI),
126440	S. griseus ST017887(HKI),
126441	S. griseus ST027607(HKI), GT20044034,
126442	S. griseus ST019894(HKI),
126443	S. griseus ST030110(HKI),
126444	S. griseus ST002122(HKI),
126445	S. griseus ST018317(HKI),
126446	S. griseus ST010420(HKI), BI 07144,
126447	S. griseus ST027157(HKI), GT20044036,
126448	S. griseus ST026780(HKI), GT20044040,
126449	S. griseus ST026805(HKI), GT20044043,
126450	S. griseus ST026806(HKI), GT20044044,
126451	S. griseus ST026811(HKI), GT20044045,
126452	S. griseus ST026908(HKI), GT20044033,
126453	S. griseus ST026887(HKI), GT20044031,
126454	S. griseus ST028181(HKI),
126455	S. griseus ST028171(HKI),
126456	S. griseus ST028172(HKI),
126457	S. griseus ST032355(HKI),
126458	S. griseus ST027159(HKI), GT20044037,
127849	S. griseus STI07408(IMET), 1196-130, GT19952037, IMET ...
127850	S. griseus STI07533(IMET), LLG-165, IMET 7533
127851	S. griseus STI07534(IMET), LLG-173, IMET 7534
127852	S. griseus STI07578(IMET), 1084-2908, IMET 7578
127853	S. griseus ST027931(HKI),
127854	S. griseus STI07261(IMET), 623-003, GT19942002, IMET ...
127855	S. griseus STI07266(IMET),
127856	S. griseus STI07535(IMET), LL G-210,
142769	S. griseus CCUG 14549, ATCC 13440, NCTC 7807
164928	S. griseus JCM 4044, BCRC 12037
164929	S. griseus JCM 4048
164930	S. griseus JCM 4049, HUT 6121, NBRC 109898
164989	S. griseus JCM 4681

Morphology

Cell morphology

@ref	Gram stain	Cell shape
122575	positive	rod-shaped
125439	positive
125438	positive

Colony morphology

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
9519	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
39245	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
9519	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
122575	CIP Medium 57	Medium recipe at CIP
122575	CIP Medium 236	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
9519	positive	growth	28	mesophilic
22954	positive	growth	37	mesophilic
39245	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
122575	positive	growth	25-37	mesophilic
122575	negative	growth	10
122575	negative	growth	41
122575	negative	growth	45

Culture pH

@ref	Ability	Type	PH
22954		growth	4-5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
122575	obligate aerobe
125438	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.411

Halophily

@ref	Salt	Growth	Tested relation	Concentration
22954	NaCl	positive	growth	5 %(w/v)
122575	NaCl	positive	growth	0-4 %
122575	NaCl		growth	6 %
122575	NaCl		growth	8 %
122575	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
122575	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
122575	606565 ChEBI	hippurate	-	hydrolysis
22954	24741 ChEBI	hydroxyproline	+	growth
22954	17368 ChEBI	hypoxanthine	+	hydrolysis
22954	15443 ChEBI	inulin	-	growth
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
22954	15971 ChEBI	L-histidine	+	growth
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
122575	17632 ChEBI	nitrate	-	reduction
122575	17632 ChEBI	nitrate	-	respiration
122575	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
22954	16634 ChEBI	raffinose	-	growth
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
22954	17814 ChEBI	salicin	-	growth
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
22954	15318 ChEBI	xanthine	+	hydrolysis
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.
22954	16869	oleandomycin	100 µg/mL
22954	8309	polymyxin b	15000 µg/mL
22954	17076	streptomycin	20 µg/mL

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122575	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
122575	15688 ChEBI	acetoin	-
122575	17234 ChEBI	glucose

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
122575	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122575	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
122575	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122575	caseinase	+	3.4.21.50
122575	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
122575	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
122575	gamma-glutamyltransferase	-	2.3.2.2
122575	gelatinase	-
122575	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122575	lipase	-
68382	lipase (C 14)	-		from API zym
122575	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122575	ornithine decarboxylase	-	4.1.1.17
122575	oxidase	-
122575	phenylalanine ammonia-lyase	-	4.3.1.24
122575	protease	+
68382	trypsin	-	3.4.21.4	from API zym
122575	tryptophan deaminase	-
122575	tween esterase	-
122575	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122575	-	+	-	-	-	+	-	-	-	+	-	+	-	-	-	-	-	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122575	not determinedn.d.	+/-	-	-	-	+/-	-	-	-	-	+/-	+/-	+	-	-	-	-	-	-	-	-	-	+	-	-	+	-	+/-	-	-	-	-	+/-	-	-	-	+/-	+/-	-	+/-	-	-	-	-	-	-	-	+/-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
122575	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	+	+	-	-	-	+	+	-	+	+	+	-	-	+	-	-	+	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	+	+	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	-	+	+	-	+	-	+	+	+	+	-	-	-	+	-	+	-	+	+	+	+	-	+	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Other	#Wound
#Host Body-Site	#Plant	#Root (Rhizome)

Isolation

@ref	Sample type
9519	potato scab
122575	Potato scab

Taxonmaps

69479

Global distribution of 16S sequence AB184300 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	286
Soil Samples	2441
Animal Samples	1009
Plant Samples	294
Total Samples	4030

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
9519	yes, in single cases	yes, in single cases	1	Risk group (German classification) According to TRBA 466
122575			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1465533v1 assembly for Streptomyces griseus JCM 4516	scaffold	GCA_014655335	1911.24	1911	48.06

Genome browser: GCA_014655335

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Streptomyces setonii strain DSM40395 16S-23S intergenic spacer region, partial sequence	AF363495	292	1911
20218	Streptomyces griseus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4516	D44204	120	1911
9519	Streptomyces griseus gene for 16S ribosomal RNA, complete sequence	D63872	1532	1911
9519	Streptomyces setonii gene for 16S rRNA, partial sequence, strain: NBRC 13085	AB184300	1454	1911
124043	Streptomyces griseus strain JCM 4516 16S ribosomal RNA gene, partial sequence.	MT760562	1375	1911
124043	Streptomyces griseus strain NBRC 13085(T) 16S ribosomal RNA gene, partial sequence.	MN686611	429	1911

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces griseus JCM 4516
NCBI: GCA_014655335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	86.90	no
125439	motility	BacteriaNetⓘ	no	87.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces griseus JCM 4516
NCBI: GCA_014655335.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	92.02	no
125438	anaerobic	anaerobicⓘ	no	97.87	no
125438	aerobic	aerobicⓘ	yes	92.03	yes
125438	spore-forming	spore-formingⓘ	yes	92.41	no
125438	thermophilic	thermophileⓘ	no	95.50	no
125438	flagellated	motile2+ⓘ	no	88.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comprehensive investigation of marine Actinobacteria associated with the sponge Halichondria panicea.	Schneemann I, Nagel K, Kajahn I, Labes A, Wiese J, Imhoff JF.	Appl Environ Microbiol	10.1128/aem.00780-10	2010
	Cloning and expression of a gene from Streptomyces scabies encoding a putative pathogenicity factor.	Bukhalid RA, Loria R.	J Bacteriol	10.1128/jb.179.24.7776-7783.1997	1997
Genetics	Bacteriobiota of the Cave Church of Sts. Peter and Paul in Serbia-Culturable and Non-Culturable Communities' Assessment in the Bioconservation Potential of a Peculiar Fresco Painting.	Dimkic I, Copic M, Petrovic M, Stupar M, Savkovic Z, Knezevic A, Subakov Simic G, Ljaljevic Grbic M, Unkovic N.	Int J Mol Sci	10.3390/ijms24021016	2023
Genetics	Carotenoid synthesis in Streptomyces setonii ISP5395 is induced by the gene crtS, whose product is similar to a sigma factor.	Kato F, Hino T, Nakaji A, Tanaka M, Koyama Y	Mol Gen Genet	10.1007/BF00293207	1995
Genetics	[Anionic polymers of the cell wall of Streptomyces sp. VKM An-2534].	Tul'skaia EM, Shashkov AS, Senchenkova SN, Akimov VN, Bueva OV, Stupar' OS, Evtushenko LI	Bioorg Khim		2007

References

#9519	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40395
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#22954	K. Miyajima, F. Tanaka, T. Takeuchi, S. Kuninaga: Streptomyces turgidiscabies sp. nov.. IJSEM 48: 495 - 502 1998 ( DOI 10.1099/00207713-48-2-495 , PubMed 9731290 )
#39245	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122575	Collection of Institut Pasteur ; Curators of the CIP; CIP 105279
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces griseus (DSM 40395, ATCC 25497, CBS 105.72)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014655335

16S sequences

Genome-based predictions

Predictions

Literature

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