Name: Streptomyces eurythermus DSM 40014
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15135

Type strain:

Species: Streptomyces eurythermus

Culture col. no.: DSM 40014, ATCC 14975, ATCC 19749, CBS 488.68, IFO 12764, ISP 5014, NBRC 12764, NRRL 2539, RIA 1030, JCM 4206, BCRC 13650, CGMCC 4.1697, IMET 43078, JCM 4575, KCTC 9731, VKM Ac-1729

Strain history: KCC S-0206 <-- J. Nüesch <-- ETH 6677.

NCBI tax ID(s): 42237 (species)

SI-ID 297085

ATCC 14975, ATCC 19749, IFO 12764, DSM 40014, NRRL 2539, JCM 4206, CCRC 13650, IMET 43078, VKM Ac-1729, JCM 4575, CBS 488.68, KCTC 9731, AS 4.1697, NBRC 12764, KACC 20129, BCRC 13650, CGMCC 4.1697

Section

Streptomyces eurythermus DSM 40014 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces eurythermus**
	Full Scientific Name (LPSN)	Streptomyces eurythermus Corbaz et al. 1957 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #19386]	Colony color	Black red
[Ref.: #19386]	Incubation period	10-14 days
[Ref.: #19386]	Cultivation medium used	ISP 2

[Ref.: #19386]	Colony color	Nut brown
[Ref.: #19386]	Incubation period	10-14 days
[Ref.: #19386]	Cultivation medium used	ISP 3

[Ref.: #19386]	Colony color	Khaki grey
[Ref.: #19386]	Incubation period	10-14 days
[Ref.: #19386]	Cultivation medium used	ISP 4

[Ref.: #19386]	Colony color	Maize yellow
[Ref.: #19386]	Incubation period	10-14 days
[Ref.: #19386]	Cultivation medium used	ISP 5

[Ref.: #19386]	Colony color	Pale brown
[Ref.: #19386]	Incubation period	10-14 days
[Ref.: #19386]	Cultivation medium used	ISP 6

[Ref.: #19386]	Colony color	Fawn brown
[Ref.: #19386]	Incubation period	10-14 days
[Ref.: #19386]	Cultivation medium used	ISP 7

[Ref.: #19386]	Multicellular complex forming ability	yes
[Ref.: #19386]	Multicellular complex name	Aerial Mycelium
[Ref.: #19386]	Multicellular complex color	Light ivory
[Ref.: #19386]	Medium Name (multicellularity)	ISP 2

[Ref.: #19386]	Multicellular complex forming ability	yes
[Ref.: #19386]	Multicellular complex name	Aerial Mycelium
[Ref.: #19386]	Multicellular complex color	Grey beige
[Ref.: #19386]	Medium Name (multicellularity)	ISP 3

[Ref.: #19386]	Multicellular complex forming ability	yes
[Ref.: #19386]	Multicellular complex name	Aerial Mycelium
[Ref.: #19386]	Multicellular complex color	Moos grey
[Ref.: #19386]	Medium Name (multicellularity)	ISP 4

[Ref.: #19386]	Multicellular complex forming ability	yes
[Ref.: #19386]	Multicellular complex name	Aerial Mycelium
[Ref.: #19386]	Medium Name (multicellularity)	ISP 5

[Ref.: #19386]	Multicellular complex forming ability	yes
[Ref.: #19386]	Multicellular complex name	Aerial Mycelium
[Ref.: #19386]	Medium Name (multicellularity)	ISP 6

[Ref.: #19386]	Multicellular complex forming ability	yes
[Ref.: #19386]	Multicellular complex name	Aerial Mycelium
[Ref.: #19386]	Multicellular complex color	Moos grey
[Ref.: #19386]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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Culture medium

ISP 2

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 6

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Culture medium growth

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Culture medium composition

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Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

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		Temperature
[Ref.: #9215]	growth	28 °C
[Ref.: #19386]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9215]	Temperature range	mesophilic
[Ref.: #19386]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9215]	Name of produced compound	angolamycin
[Ref.: #20216]	Name of produced compound	Angolamycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19386]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19386]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19386]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19386]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19386]	mannitol ChEBI	+
[Ref.: #19386]	myo-inositol ChEBI	+/-
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19386]	raffinose ChEBI	+
[Ref.: #19386]	rhamnose ChEBI	+/-
[Ref.: #19386]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19386]	xylose ChEBI	+/-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	angolamycin	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19386]	252	+	+	+	+	+	+	-	+	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19386]	341	not determinedn.d.	+	-	+	-	+	+	+	+	+	+	+	+	+	-	-	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9215]	Sample type/isolated from	soil
[Ref.: #9215]	Country	Angola
[Ref.: #9215]	Country ISO 3 Code	AGO
[Ref.: #9215]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Cuanza
[Ref.: #67770]	Country	Angola
[Ref.: #67770]	Country ISO 3 Code	AGO
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB184127 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	1
Soil Samples	63
Animal Samples	5
Plant Samples	3
Total Samples	72

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9215]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19386]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces eurythermus strain DSM40014 16S-23S intergenic spacer region, partial sequence	AF363488	295	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus 16S ribosomal RNA, complete sequence	D63870	1531	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4575	D44243	120	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296937	260	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS12 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296938	262	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS19 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296939	261	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS2 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296940	271	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS4 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296941	272	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS7 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296942	262	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS8 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296943	262	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus strain KCCM 12267 clone ITS9 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY296944	263	ENA	42237 tax ID	*
[Ref.: #20218]	Streptomyces eurythermus gene for 16S rRNA, partial sequence, strain: NBRC 12764	AB184127	1459	ENA	42237 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces eurythermus JCM 4206	GCA_014649115	scaffold	GenBank	42237 tax ID	*
[Ref.: #66792]	Streptomyces eurythermus strain JCM 4206	42237.4	wgs	PATRIC	42237 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces eurythermus JCM 4206 NCBI: GCA_014649115.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces eurythermus JCM 4206 NCBI: GCA_014649115.1
[Ref.: #69480]	flagellated	no	98.152	no
[Ref.: #69480]	gram-positive	yes	89.747	no
[Ref.: #69480]	anaerobic	no	99.284	no
[Ref.: #69480]	aerobic	yes	95.188	no
[Ref.: #69480]	halophile	no	95.299	no
[Ref.: #69480]	spore-forming	yes	95.816	no
[Ref.: #69480]	glucose-util	yes	88.752	yes
[Ref.: #69480]	thermophile	no	97.135	no
[Ref.: #69480]	motile	no	94.153	no
[Ref.: #69480]	glucose-ferment	no	89.856	no

Availability in culture collections External links

[Ref.: #9215]

Culture collection no.

DSM 40014, ATCC 14975, ATCC 19749, CBS 488.68, IFO 12764, ISP 5014, NBRC 12764, NRRL 2539, RIA 1030, JCM 4206, BCRC 13650, CGMCC 4.1697, IMET 43078, JCM 4575, KCTC 9731, VKM Ac-1729

[Ref.: #84239]

SI-ID 297085

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces chilikensis sp. nov., a halophilic streptomycete isolated from brackish water sediment.	Ray L, Suar M, Pattnaik AK, Raina V	Int J Syst Evol Microbiol	10.1099/ijs.0.046284-0	2013	*
Phylogeny	Streptomyces nanningensis sp. nov. a novel Streptomycete from forest soil.	Jiang Y, Li WJ, Xu P, Li MG, Wen ML, Du GH, Xu LH, Jiang CL	Antonie Van Leeuwenhoek	10.1007/s10482-004-3210-2	2005	*

References

#9215

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40014

#19386

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84239

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297085.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces eurythermus JCM 4206

Streptomyces eurythermus JCM 4206

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