Name: Streptomyces coeruleorubidus DSM 40145
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 15105

Type strain:

Species: Streptomyces coeruleorubidus

Culture col. no.: DSM 40145, ATCC 13740, ATCC 23900, CBS 796.68, ETH 24205, IFO 12855, INA 12531/54, ISP 5145, JCM 4359, NBRC 12855, RIA 1132, BCRC 11463, CGMCC 4.1678, IFM 11211, IMET 42060, KCTC 1743, KCTC 1922, NBIMCC 1152, NCIMB 9620, NRRL B-2569, VKM Ac-576

Strain history: KCC S-0359 <-- IFO 12855 <-- SAJ <-- ISP 5145 <-- INA 12531/54.

NCBI tax ID(s): 116188 (species)

SI-ID 125929

ATCC 13740, ATCC 23900, IFO 12855, DSM 40145, JCM 4359, CCRC 11463, IMET 42060, NCIMB 9620, NRRL B-2569, VKM Ac-576, NCIMB9833, NCIB 9620, CBS 796.68, KCTC 1743, KCTC 1922, AS 4.1678, NBRC 12855, BCRC 11463, NBIMCC 1152, CGMCC 4.1678

Special Collections

Other strains from Streptomyces coeruleorubidus

Section

Streptomyces coeruleorubidus DSM 40145 is a spore-forming bacterium that produces antibiotic compounds and was isolated from soil.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces coeruleorubidus**
	Full Scientific Name (LPSN)	Streptomyces coeruleorubidus (Preobrazhenskaya 1957) Pridham et al. 1958 (Approved Lists 1980)

Synonym

"Actinomyces coeruleorubidus"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9345]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9345]

Culture medium growth

[Ref.: #9345]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9345]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #9345]	growth	28 °C
[Ref.: #18545]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.429

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.588
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9345]	Name of produced compound	daunomycin
[Ref.: #20216]	Name of produced compound	Rubomycin
[Ref.: #67770]	Name of produced compound	Rubomycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18545]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18545]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #18545]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18545]	glucose ChEBI	-
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18545]	mannitol ChEBI	+
[Ref.: #18545]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18545]	raffinose ChEBI	+
[Ref.: #18545]	rhamnose ChEBI	+
[Ref.: #18545]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
[Ref.: #18545]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18545]	105	+	-	-	-	+	+	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18545]	222	not determinedn.d.	+	+	+	-	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9345]	Sample type/isolated from	soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18545]	Biosafety level	1	German classification
[Ref.: #9345]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces coeruleorubidus partial 16S rRNA gene, strain ISP 5145	AJ306622	1451	GenBank ENA	116188 tax ID	*
[Ref.: #20218]	Streptomyces coeruleorubidus strain ISP 5145 16S ribosomal RNA gene, partial sequence	AY999719	1450	GenBank ENA	116188 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces coeruleorubidus ATCC 13740	GCA_008705135	complete	GenBank ENA	116188 tax ID	*
[Ref.: #66792]	Streptomyces coeruleorubidus JCM 4359	GCA_014649455	scaffold	GenBank ENA	116188 tax ID	*
[Ref.: #66792]	Streptomyces coeruleorubidus strain ATCC 13740	116188.4	complete	PATRIC	116188 tax ID	*
[Ref.: #66792]	Streptomyces coeruleorubidus strain JCM 4359	116188.5	wgs	PATRIC	116188 tax ID	*

[Ref.: #67770]

GC-content

73.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces coeruleorubidus ATCC 13740 NCBI: GCA_008705135.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces coeruleorubidus ATCC 13740 NCBI: GCA_008705135.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	86.438	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.057	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.429	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.588	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #9345]

Culture collection no.

DSM 40145, ATCC 13740, ATCC 23900, CBS 796.68, ETH 24205, IFO 12855, INA 12531/54, ISP 5145, JCM 4359, NBRC 12855, RIA 1132, BCRC 11463, CGMCC 4.1678, IFM 11211, IMET 42060, KCTC 1743, KCTC 1922, NBIMCC 1152, NCIMB 9620, NRRL B-2569, VKM Ac-576

[Ref.: #84211]

SI-ID 125929

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces xylanilyticus sp. nov., isolated from soil.	Moonmangmee D, Kanchanasin P, Phongsopitanun W, Tanasupawat S, Moonmangmee S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002282	2017	*
Phylogeny	Streptomyces shaanxiensis sp. nov., a blue pigment-producing streptomycete from sewage irrigation soil.	Lin YB, Wang XY, Fang H, Ma YN, Tang J, Tang M, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.029959-0	2011	*
Cultivation	Studies on the production of daunomycinone-derived glycosides and related metabolites in Streptomyces coeruleorubidus and Streptomyces peucetius.	Blumauerova M, Mateju J, Stajner K, Vanek Z	Folia Microbiol (Praha)	10.1007/BF02877657	1977	*
	Creating diverse glycosides of 2'-hydroxyflavone through microbial glycosylation.	Ren J, Barton CD, Zhan J	Fitoterapia	10.1016/j.fitote.2022.105247	2022	*

References

#9345

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40145

#18545

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84211

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125929.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces coeruleorubidus ATCC 13740

Streptomyces coeruleorubidus ATCC 13740

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