Ignavigranum ruoffiae (CCUG 42496)

Name: Ignavigranum ruoffiae (CCUG 42496)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 150826

Type strain

Culture col. no. CCUG 42496

NCBI tax ID(s) 89093

Special Collections CCUG

Links

Ignavigranum ruoffiae CCUG 42496 is a prokaryote that was isolated from Human blood.

Name and taxonomic classification

SI-ID 109262

CCUG 42496

@ref 20215

Last LPSN update 2025-12-16 10:06:11

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Lactobacillales

Family Aerococcaceae

Genus Ignavigranum

Species Ignavigranum ruoffiae

Full scientific name Ignavigranum ruoffiae Collins et al. 1999

BacDive ID	Other strains from **Ignavigranum ruoffiae** (3)	Type strain
235	I. ruoffiae 1607-97, DSM 15695, ATCC 700630, CCUG 37658, ... (type strain)
149493	I. ruoffiae CCUG 37841
156840	I. ruoffiae CCUG 65994

Morphology

Culture and growth conditions

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	-	3.2.1.21	from API zym
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	L-lactaldehyde degradation	100	3 of 3
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	pentose phosphate pathway	81.82	9 of 11
66794	lipoate biosynthesis	80	4 of 5
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	vitamin B1 metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	vitamin B12 metabolism	73.53	25 of 34
66794	flavin biosynthesis	73.33	11 of 15
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	propanol degradation	71.43	5 of 7
66794	pyrimidine metabolism	68.89	31 of 45
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	acetoin degradation	66.67	2 of 3
66794	glycolysis	64.71	11 of 17
66794	heme metabolism	64.29	9 of 14
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	purine metabolism	61.7	58 of 94
66794	NAD metabolism	61.11	11 of 18
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	glycogen metabolism	60	3 of 5
66794	oxidative phosphorylation	58.24	53 of 91
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	serine metabolism	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	lipid metabolism	54.84	17 of 31
66794	proline metabolism	54.55	6 of 11
66794	gluconeogenesis	50	4 of 8
66794	sphingosine metabolism	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	suberin monomers biosynthesis	50	1 of 2
66794	coenzyme A metabolism	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	isoprenoid biosynthesis	46.15	12 of 26
66794	phenylalanine metabolism	46.15	6 of 13
66794	histidine metabolism	44.83	13 of 29
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	cysteine metabolism	44.44	8 of 18
66794	valine metabolism	44.44	4 of 9
66794	degradation of sugar alcohols	43.75	7 of 16
66794	mevalonate metabolism	42.86	3 of 7
66794	glutamate and glutamine metabolism	42.86	12 of 28
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	citric acid cycle	42.86	6 of 14
66794	arachidonate biosynthesis	40	2 of 5
66794	Entner Doudoroff pathway	40	4 of 10
66794	threonine metabolism	40	4 of 10
66794	methionine metabolism	38.46	10 of 26
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	isoleucine metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	degradation of pentoses	35.71	10 of 28
66794	alanine metabolism	34.48	10 of 29
66794	IAA biosynthesis	33.33	1 of 3
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	leucine metabolism	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	starch degradation	30	3 of 10
66794	reductive acetyl coenzyme A pathway	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	tetrahydrofolate metabolism	28.57	4 of 14
66794	vitamin B6 metabolism	27.27	3 of 11
66794	d-xylose degradation	27.27	3 of 11
66794	tryptophan metabolism	26.32	10 of 38
66794	lysine metabolism	26.19	11 of 42
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	sulfopterin metabolism	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	androgen and estrogen metabolism	25	4 of 16
66794	glycogen biosynthesis	25	1 of 4
66794	sulfate reduction	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	ascorbate metabolism	22.73	5 of 22
66794	arachidonic acid metabolism	22.22	4 of 18
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	degradation of hexoses	22.22	4 of 18
66794	glutathione metabolism	21.43	3 of 14
66794	arginine metabolism	20.83	5 of 24

Fatty acid profile

Metadata FA analysis

@ref

55442

Fatty acid	Percentage	ECL
C18:2 ω6,9c/C18:0 ANTE	39	17.724
C18:1 ω9c	25.1	17.769
C16:0	22.1	16
C18:0	6	18
C16:1 ω7c	4.6	15.819
C14:0	3.2	14

Metadata FA analysis

@ref

55442

Fatty acid	Percentage	ECL
C18:2 ω6,9c/C18:0 ANTE	48.5	17.724
C18:1 ω9c	23.4	17.769
C16:0	17.8	16
C16:1 ω7c	4.8	15.819
C18:0	4.4	18
C14:0	1.2	14

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
55442	-	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	+	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
55442	-	-	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human
#Host Body Product	#Fluids

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
55442	Human blood	1999-07-01	Wien	Austria	AUT	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#55442	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 42496
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Ignavigranum ruoffiae (CCUG 42496)

Name and taxonomic classification

Morphology

Culture and growth conditions