Name: Streptomyces chartreusis DSM 40085
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 15077

Type strain:

Species: Streptomyces chartreusis

Culture col. no.: DSM 40085, ATCC 14922, ATCC 19738, CBS 476.68, IFO 12753, ISP 5085, JCM 4570, NBRC 12753, NRRL 2287, RIA 1018, UC 2012, BCRC 13673, CCT 5005, CGMCC 4.1639, ICMP 154, ICMP 321, KCTC 9704, LMG 8587, NRRL ISP-5085, VKM Ac-1721

Strain history: KCC S-0570 <-- IFO 12753 <-- SAJ <-- ISP 5085 <-- NRRL 2287 <-- Upjohn Co., USA; UC 2012 (=K-180).

NCBI tax ID(s): 1969 (species)

SI-ID 36204

ATCC 14922, ATCC 19738, IFO 12753, NRRL 2287, DSM 40085, JCM 4570, CCRC 13673, CCT 5005, VKM Ac-1721, NRRL B-2287, CBS 476.68, LMG 8587, KCTC 9704, AS 4.1639, NBRC 12753, BCRC 13673, NRRL 22870, ICMP 321, ICMP 154, CGMCC 4.1639

Other strains from Streptomyces chartreusis

S. chartreusis K 160, DSM 40686
S. chartreusis 2KF, DSM 41255, IMRU 3962
S. chartreusis DSM 41447, NRRL 3882
S. chartreusis DSM 41592, NRRL B-2199, IPV 554x
S. chartreusis DSM 41593, NRRL B-8150, ETH 7302
S. chartreusis DSM 41594, ETH 13007, NRRL B-8151
S. chartreusis DSM 41595, ETH 13212, NRRL B-8152
S. chartreusis B 122, DSM 41597, NRRL B-16268
S. chartreusis DSM 46458, HMGB B 903, IMET 40627, ...

Section

Streptomyces chartreusis DSM 40085 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces chartreusis**
	Full Scientific Name (LPSN)	Streptomyces chartreusis Leach et al. 1953 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.347

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9298]	growth	28 °C
[Ref.: #18529]	optimum	30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #9298]	Temperature range	mesophilic
[Ref.: #18529]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #9298]	Name of produced compound	chartreusin
[Ref.: #9298]	Name of produced compound	aminoacyclase

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Observation

quinones: MK-9(H₆), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E

	Metabolite	Production
[Ref.: #67770]	chartreusin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	yes	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18529]	89	+	+	+	+	+	+	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9298]	Sample type/isolated from	soil
[Ref.: #9298]	Country	Africa
[Ref.: #9298]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KC571198 (>99% sequence identity) for Lactobacillaceae from Microbeatlas

Aquatic Samples	4479
Soil Samples	2696
Animal Samples	29069
Plant Samples	2393
Total Samples	38637

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18529]	Biosafety level	1	German classification
[Ref.: #9298]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9298]	Streptomyces chartreusis strain JCM 4570 16S ribosomal RNA gene, partial sequence	MT760575	1375	ENA	1969 tax ID
[Ref.: #20218]	Streptomyces chartreusis partial 16S rRNA gene, strain ISP 5085	AJ399468	1448	ENA	1969 tax ID	*
[Ref.: #20218]	Streptomyces chartreusis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4570	D44239	120	ENA	1969 tax ID	*
[Ref.: #20218]	Marinobacter sp. KCC 16S ribosomal RNA gene, partial sequence	DQ479385	552	ENA	379876 tax ID	*
[Ref.: #20218]	Lactobacillus plantarum strain KCC-16 16S ribosomal RNA gene, complete sequence	KC571198	1441	ENA	1590 tax ID	*
[Ref.: #20218]	Streptomyces chartreusis gene for 16S rRNA, partial sequence, strain: NBRC 12753	AB184839	1477	ENA	1969 tax ID	*
[Ref.: #20218]	Streptomyces chartreusis strain NBRC 12753 16S ribosomal RNA gene, partial sequence	JQ086575	1392	ENA	1969 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces chartreusis ATCC 14922	GCA_008704715	complete	GenBank	1969 tax ID	*
[Ref.: #66792]	Streptomyces chartreusis JCM 4570	GCA_014650315	scaffold	GenBank	1969 tax ID	*
[Ref.: #66792]	Streptomyces chartreusis strain ATCC 14922	1969.6	complete	PATRIC	1969 tax ID	*
[Ref.: #66792]	Streptomyces chartreusis strain JCM 4570	1969.9	wgs	PATRIC	1969 tax ID	*

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GC-content

72.1 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces chartreusis ATCC 14922 NCBI: GCA_008704715.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces chartreusis ATCC 14922 NCBI: GCA_008704715.1
[Ref.: #69480]	motile	no	94.261	no
[Ref.: #69480]	flagellated	no	98.075	no
[Ref.: #69480]	gram-positive	yes	89.816	no
[Ref.: #69480]	anaerobic	no	99.243	no
[Ref.: #69480]	aerobic	yes	92.963	no
[Ref.: #69480]	halophile	no	92.46	no
[Ref.: #69480]	spore-forming	yes	94.86	no
[Ref.: #69480]	thermophile	no	98.979	yes
[Ref.: #69480]	glucose-util	yes	88.21	no
[Ref.: #69480]	glucose-ferment	no	88.987	no

Availability in culture collections External links

[Ref.: #9298]

Culture collection no.

DSM 40085, ATCC 14922, ATCC 19738, CBS 476.68, IFO 12753, ISP 5085, JCM 4570, NBRC 12753, NRRL 2287, RIA 1018, UC 2012, BCRC 13673, CCT 5005, CGMCC 4.1639, ICMP 154, ICMP 321, KCTC 9704, LMG 8587, NRRL ISP-5085, VKM Ac-1721

[Ref.: #84183]

SI-ID 36204

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces ziwulingensis sp. nov., isolated from grassland soil.	Lin YB, Wang XY, Wang TT, An SS, Shi P, Wei GH	Int J Syst Evol Microbiol	10.1099/ijs.0.043026-0	2012	*
Phylogeny	Streptomyces qaidamensis sp. nov., isolated from sand in the Qaidam Basin, China.	Zhang B, Tang S, Chen X, Zhang G, Zhang W, Chen T, Liu G, Li S, Dos Santos LT, Castro HC, Facey P, Hitchings M, Dyson P	J Antibiot (Tokyo)	10.1038/s41429-018-0080-9	2018	*
Phylogeny	Streptomyces rhizosphaerihabitans sp. nov. and Streptomyces adustus sp. nov., isolated from bamboo forest soil.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijsem.0.001236	2016	*
Phylogeny	Streptomyces graminifolii sp. nov., isolated from bamboo (Sasa borealis) litter.	Lee HJ, Whang KS	Int J Syst Evol Microbiol	10.1099/ijs.0.056895-0	2014	*
Phylogeny	Streptomyces osmaniensis sp. nov., isolated from soil.	Reddy TVK, Mahmood S, Idris MM, Ciesielski S	Int J Syst Evol Microbiol	10.1099/ijs.0.017749-0	2009	*

References

#9298

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40085

#18529

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84183

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID36204.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces chartreusis ATCC 14922

Streptomyces chartreusis ATCC 14922

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