Name: Streptomyces antimycoticus DSM 40284
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14991

Type strain:

Species: Streptomyces antimycoticus

Culture col. no.: DSM 40284, ATCC 23880, CBS 660.68, IFO 12839, ISP 5284, JCM 4228, NBRC 12839, NRRL 2421, RIA 1198, BCRC 15131, CGMCC 4.1591, JCM 4621, KCCM 40184, KCTC 9694, KCTC 9775, NBIMCC 1034, VKM Ac-1824

Strain history: KCC S-0228 <-- Y. Okami <-- ISP 5284 <-- NRRL 2421.

NCBI tax ID(s): 68175 (species)

SI-ID 38280

ATCC 23880, IFO 12839, DSM 40284, JCM 4228, NRRL 2421, JCM 4621, VKM Ac-1824, CBS 660.68, KCTC 9694, KCTC 9775, AS 4.1591, NBRC 12839, BCRC 15131, CCRC 15131, NBIMCC 1034, CGMCC 4.1591

Special Collections

Section

Streptomyces antimycoticus DSM 40284 is a spore-forming bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces antimycoticus**
	Full Scientific Name (LPSN)	Streptomyces antimycoticus Waksman 1957 (Approved Lists 1980)

Synonym

Streptomyces sporoclivatus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #19432]	Colony color	Yellow
[Ref.: #19432]	Incubation period	10-14 days
[Ref.: #19432]	Cultivation medium used	ISP 2

[Ref.: #19432]	Colony color	Yellow
[Ref.: #19432]	Incubation period	10-14 days
[Ref.: #19432]	Cultivation medium used	ISP 3

[Ref.: #19432]	Colony color	Yellow
[Ref.: #19432]	Incubation period	10-14 days
[Ref.: #19432]	Cultivation medium used	ISP 4

[Ref.: #19432]	Colony color	Yellow
[Ref.: #19432]	Incubation period	10-14 days
[Ref.: #19432]	Cultivation medium used	ISP 5

[Ref.: #19432]	Colony color	Yellow
[Ref.: #19432]	Incubation period	10-14 days
[Ref.: #19432]	Cultivation medium used	ISP 6

[Ref.: #19432]	Colony color	Yellow
[Ref.: #19432]	Incubation period	10-14 days
[Ref.: #19432]	Cultivation medium used	ISP 7

[Ref.: #19432]	Multicellular complex forming ability	yes
[Ref.: #19432]	Multicellular complex name	Aerial Mycelium
[Ref.: #19432]	Multicellular complex color	Grey
[Ref.: #19432]	Medium Name (multicellularity)	ISP 2

[Ref.: #19432]	Multicellular complex forming ability	yes
[Ref.: #19432]	Multicellular complex name	Aerial Mycelium
[Ref.: #19432]	Multicellular complex color	Grey
[Ref.: #19432]	Medium Name (multicellularity)	ISP 3

[Ref.: #19432]	Multicellular complex forming ability	yes
[Ref.: #19432]	Multicellular complex name	Aerial Mycelium
[Ref.: #19432]	Multicellular complex color	Grey
[Ref.: #19432]	Medium Name (multicellularity)	ISP 4

[Ref.: #19432]	Multicellular complex forming ability	yes
[Ref.: #19432]	Multicellular complex name	Aerial Mycelium
[Ref.: #19432]	Multicellular complex color	Grey
[Ref.: #19432]	Medium Name (multicellularity)	ISP 5

[Ref.: #19432]	Multicellular complex forming ability	yes
[Ref.: #19432]	Multicellular complex name	Aerial Mycelium
[Ref.: #19432]	Multicellular complex color	Grey
[Ref.: #19432]	Medium Name (multicellularity)	ISP 6

[Ref.: #19432]	Multicellular complex forming ability	yes
[Ref.: #19432]	Multicellular complex name	Aerial Mycelium
[Ref.: #19432]	Multicellular complex color	Grey
[Ref.: #19432]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #19432]

Culture medium

ISP 2

[Ref.: #19432]

Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ISP 3

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19432]

Culture medium

ISP 4

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19432]

Culture medium

ISP 5

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Culture medium growth

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Culture medium composition

expand / minimize

[Ref.: #19432]

Culture medium

ISP 6

[Ref.: #19432]

Culture medium growth

[Ref.: #19432]

Culture medium composition

expand / minimize

[Ref.: #19432]

Culture medium

ISP 7

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9435]	growth	28 °C
[Ref.: #19432]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %91.467

[Ref.: #19432]	Spore description	Formation of spore chains: spira, spore surface: warty
[Ref.: #19432]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.63
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9435]	Name of produced compound	endomycin complex (=helixin)
[Ref.: #9435]	Name of produced compound	helixin

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #19432]		NaCl		growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19432]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19432]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #19432]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19432]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #19432]	mannitol ChEBI	+
[Ref.: #19432]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #19432]	raffinose ChEBI	+
[Ref.: #19432]	rhamnose ChEBI	+
[Ref.: #19432]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19432]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #67770]	helixin ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19432]	295	-	-	-	-	-	-	+	+	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9435]	Sample type/isolated from	composted soil

[Ref.: #67770]	Sample type/isolated from	Composted soil
* marker position based on {}

Isolation sources categories

#Engineered	#Biodegradation	#Composting
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9435]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19432]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces antimycoticus strain CGMCC 4.1591 16S ribosomal RNA gene, partial sequence	HQ244448	1381	GenBank ENA	68175 tax ID	*
[Ref.: #20218]	Streptomyces antimycoticus gene for 16S rRNA, partial sequence	AB122752	565	GenBank ENA	68175 tax ID	*
[Ref.: #20218]	Streptomyces antimycoticus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4228	D44034	121	GenBank ENA	68175 tax ID	*
[Ref.: #20218]	Streptomyces antimycoticus strain KCTC 9694 16S ribosomal RNA gene, partial sequence	AY999831	1423	GenBank ENA	68175 tax ID	*
[Ref.: #20218]	Streptomyces antimycoticus gene for 16S rRNA, partial sequence, strain: NBRC 12839	AB184185	1478	GenBank ENA	68175 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces antimycoticus NBRC 12839	GCA_005405925	contig	GenBank ENA	68175 tax ID
[Ref.: #66792]	Streptomyces antimycoticus strain NBRC 12839	68175.3	wgs	PATRIC	68175 tax ID	*

[Ref.: #67770]

GC-content

71 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces antimycoticus strain NBRC 12839 PATRIC: 68175.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces antimycoticus strain NBRC 12839 PATRIC: 68175.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.686	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.475	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.63	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	91.467	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #9435]

Culture collection no.

DSM 40284, ATCC 23880, CBS 660.68, IFO 12839, ISP 5284, JCM 4228, NBRC 12839, NRRL 2421, RIA 1198, BCRC 15131, CGMCC 4.1591, JCM 4621, KCCM 40184, KCTC 9694, KCTC 9775, NBIMCC 1034, VKM Ac-1824

[Ref.: #84099]

SI-ID 38280

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Streptomyces castelarensis and Streptomyces sporoclivatus as later heterotypic synonyms of Streptomyces antimycoticus.	Komaki H, Tamura T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003882	2020	*

References

#9435

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40284

#19432

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84099

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38280.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces antimycoticus strain NBRC 12839

Streptomyces antimycoticus strain NBRC 12839

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