Name: Streptomyces albus subsp. albus DSM 40313
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14943

Type strain:

Species: Streptomyces albus subsp. albus

Culture col. no.: DSM 40313, ATCC 25426, ATCC 3004, BCRC 10802, CBS 410.63, CBS 924.69, CCUG 33990, CECT 3077, CGMCC 4.1640, CIP 104432, ETH 20200, HUT 6613, IFM 1119, IMET 40241, ISP 5313, JCM 4177, JCM 4450, KCTC 1082, NBRC 13014, NBRC 3710, NCIMB 9558, NRRL B-1811, NRRL B-2208, RIA 1206, VKM Ac-35, IMRU 3004, IFO 13014, IFO 3710, NBIMCC 2385, VTT E-991426, KCC S-0177

Strain history: CIP <- 1995, JCM <- KCC <- M. Mayama <- ATCC <- S.A. Waksman: strain IMRU 3004

NCBI tax ID(s): 1888 (species), 67257 (subspecies)

SI-ID 319085

ATCC 3004, ATCC 25426, IFO 13014, NRRL B-1811, CCUG 33990, CIP 104432, DSM 40313, IFO 3710, IMET 40241, JCM 4177, NCIMB 9558, CCRC 10802, HUT 6613, JCM 4450, NRRL B-2208, VKM Ac-35, CBS 410.63, CECT 3077, KCTC 1082, AS 4.164, NBRC 13014, NBRC 3710, BCRC 10802, NBIMCC 2385, NCIB 9558, CGMCC 4.1640, VTT E-991426

Special Collections

Other strains from Streptomyces albus subsp. albus

Section

When using BacDive for research please cite our paper

Streptomyces albus subsp. albus DSM 40313 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from straw.

Gram-positive
rod-shaped
spore-forming
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	Streptomyces albus subsp. albus
	Full Scientific Name (LPSN)	Streptomyces albus subsp. albus (Rossi Doria 1891) Nagatsu et al. 1962 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #116204]	Gram stain	positive
[Ref.: #125438]	Gram stain	positive Confidence in %91.608
[Ref.: #125439]	Gram stain	positive Confidence in %99.7

[Ref.: #116204]	Cell shape	rod-shaped

[Ref.: #116204]	Motility	no
[Ref.: #125439]	Motility	no Confidence in %91.3

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

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Caption:

Medium 65 28°C

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Intellectual property rights:

Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

MEDIUM 122 - for Streptomyces

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 57

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

CIP Medium 122

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9451]	growth	28 °C
[Ref.: #35230]	growth	30 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #116204]	growth	30-45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116204]	Oxygen tolerance	obligate aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.3

[Ref.: #125438]	Ability of spore formation	yes Confidence in %92.953
[Ref.: #125439]	Ability of spore formation	yes Confidence in %94.8

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₈), MK-9(II,III,VIII,IX-H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #116204]	esculin ChEBI	+	hydrolysis
[Ref.: #116204]	nitrate ChEBI	-	reduction
[Ref.: #116204]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #116204]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116204]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116204]	amylase	-
[Ref.: #116204]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116204]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #116204]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116204]	gelatinase	+/-
[Ref.: #116204]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116204]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116204]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116204]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116204]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #51877]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	27.2	14.711
C16:0 iso	21.8	15.626
C17:0 anteiso	16.1	16.722
C15:0 ISO	10.9	14.621
C17:0 iso	6	16.629
C16:0	4.9	16
C18:2 ω6,9c/C18:0 ANTE	3.3	17.724
C14:0 ISO	2.2	13.618
C17:1 ω9c ANTEISO	1.6	16.525
C17:0 CYCLO	1.6	16.888
C18:1 ω9c	1.4	17.769
C16:1 ISO H	1.3	15.461
C18:0	0.9	18
C15:0	0.6	15
Unidentified	0.4	13.24

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116204]	668	not determinedn.d.	+	-	+	-	+	-	-	-	-	-	-	+	+	-	-	+	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	+	-	+	-	-	-	+	-	-	+	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	-	-	+	+	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116204]	7948	-	+	+	+	-	+	+	-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9451]	Sample type/isolated from	straw
* marker position based on {}

Isolation sources categories

#Host Body Product	#Plant	#Straw
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JX486031 (>99% sequence identity) for Streptomyces albus subclade from Microbeatlas

Aquatic Samples	8
Soil Samples	170
Animal Samples	22
Plant Samples	4
Total Samples	204

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9451]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116204]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #9451]	Streptomyces albus subsp. albus strain NRRL B-1811 16S ribosomal RNA gene, partial sequence	JX486031	1499	GenBank ENA	67257 tax ID
[Ref.: #20218]	Streptomyces albus clone E1 16S ribosomal RNA gene, partial sequence	AY262299	503	GenBank ENA	1888 tax ID	*
[Ref.: #20218]	Streptomyces albus subsp. albus 16S rRNA gene, type strain DSM 40313T	AJ621602	1499	GenBank ENA	67257 tax ID	*
[Ref.: #20218]	Streptomyces albus strain DSM 40313 16S ribosomal RNA gene, partial sequence	AY999743	1358	GenBank ENA	1888 tax ID	*
[Ref.: #20218]	Streptomyces albus partial 16S rRNA	X53163	1358	GenBank ENA	1888 tax ID	*
[Ref.: #20218]	Streptomyces albus subsp. albus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4450	D44147	121	GenBank ENA	67257 tax ID	*
[Ref.: #20218]	Streptomyces albus subsp. albus gene for 16S rRNA, partial sequence, strain: NBRC 13014	AB184257	1475	GenBank ENA	67257 tax ID	*
[Ref.: #20218]	Streptomyces albus subsp. albus gene for 16S rRNA, partial sequence, strain: NBRC 3710	AB184781	1481	GenBank ENA	67257 tax ID	*
[Ref.: #124043]	Streptomyces albus strain NBRC 13014 16S ribosomal RNA gene, partial sequence.	OK413950	420	GenBank ENA	1888 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albus NBRC 13014	GCA_000813365	scaffold	GenBank ENA	1888 tax ID
[Ref.: #67770]	Streptomyces albus subsp. albus NRRL B-1811	GCA_000725885	contig	GenBank ENA	67257 tax ID
[Ref.: #66792]	Streptomyces albus NBRC 13014	1888.3	wgs	PATRIC	1888 tax ID	*
[Ref.: #66792]	Streptomyces albus NBRC 13014	2651869737	draft	JGI IMG/M	1888 tax ID	*

[Ref.: #67770]

GC-content

72.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces albus NBRC 13014 PATRIC: 1888.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	91.608	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.982	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	92.953	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	89.249	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.5	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88.5	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Streptomyces albus NBRC 13014 NCBI: GCA_000813365
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	94.8
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	91.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.3

Availability in culture collections External links

[Ref.: #9451]

Culture collection no.

DSM 40313, ATCC 25426, ATCC 3004, BCRC 10802, CBS 410.63, CBS 924.69, CCUG 33990, CECT 3077, CGMCC 4.1640, CIP 104432, ETH 20200, HUT 6613, IFM 1119, IMET 40241, ISP 5313, JCM 4177, JCM 4450, KCTC 1082, NBRC 13014, NBRC 3710, NCIMB 9558, NRRL B-1811, NRRL B-2208, RIA 1206, VKM Ac-35, IMRU 3004, IFO 13014, IFO 3710, NBIMCC 2385, VTT E-991426, KCC S-0177

[Ref.: #84052]

SI-ID 319085

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces boncukensis sp. nov., isolated from saltern soil.	Tatar D, Veyisoglu A, Saygin H, Sahin N	Arch Microbiol	10.1007/s00203-020-02036-1	2020	*
Phylogeny	Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges.	Li L, Wang J, Zhou YJ, Lin HW, Lu YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003109	2018	*
Metabolism	Cell wall glycopolymers of Streptomyces albus, Streptomyces albidoflavus and Streptomyces pathocidini.	Shashkov AS, Streshinskaya GM, Tul'skaya EM, Senchenkova SN, Baryshnikova LM, Dmitrenok AS, Ostash BE, Fedorenko VA	Antonie Van Leeuwenhoek	10.1007/s10482-016-0691-8	2016	*
Genetics	Draft Genome Sequence of Streptomyces albus Strain NBRC 13014T, the Type Species of the Genus Streptomyces.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita N	Genome Announc	10.1128/genomeA.01527-14	2015	*
Phylogeny	Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov.	Labeda DP, Doroghazi JR, Ju KS, Metcalf WW	Int J Syst Evol Microbiol	10.1099/ijs.0.058107-0	2013	*
Phylogeny	Streptomyces panacagri sp. nov., isolated from soil of a ginseng field.	Cui Y, Baek SH, Wang L, Lee HG, Cui C, Lee ST, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.029942-0	2011	*
	Proposal to designate strain ATCC 3004 (IMRU 3004) as the neotype strain of Streptomyces albus (Rossi-Doria) Waksman and Henrici.	LYONS AJ Jr, PRIDHAM TG	J Bacteriol	10.1128/jb.83.2.370-380.1962	1962	*

References

#9451

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40313

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35230 ; Curators of the CIP;
#51877 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33990

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#84052

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID319085.1 )

#116204 Collection of Institut Pasteur ; Curators of the CIP; CIP 104432

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Streptomyces albus NBRC 13014

Streptomyces albus NBRC 13014

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Change proposal