Strain identifier

BacDive ID: 14943

Type strain: Yes

Species: Streptomyces albus

Strain history: CIP <- 1995, JCM <- KCC <- M. Mayama <- ATCC <- S.A. Waksman: strain IMRU 3004

NCBI tax ID(s): 1888 (species)

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General

@ref: 9451

BacDive-ID: 14943

DSM-Number: 40313

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces albus DSM 40313 is an obligate aerobe, spore-forming, mesophilic bacterium that was isolated from straw.

NCBI tax id

  • NCBI tax id: 1888
  • Matching level: species

strain history

@refhistory
9451<- E.B. Shirling, ISP <- NRRL
67770KCC S-0177 <-- M. Mayama <-- ATCC 3004 <-- S. A. Waksman.
116204CIP <- 1995, JCM <- KCC <- M. Mayama <- ATCC <- S.A. Waksman: strain IMRU 3004

doi: 10.13145/bacdive14943.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albus
  • full scientific name: Streptomyces albus (Rossi Doria 1891) Waksman and Henrici 1943 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Streptomyces flocculus
    20215Streptomyces rangoon
    20215Actinomyces gibsonii
    20215Streptotrix alba
    20215Streptomyces gibsonii
    20215Actinomyces flocculus
    20215Streptomyces almquistii
    20215Actinomyces rangoon
    20215Actinomyces almquisti
    20215Streptomyces rangoonensis

@ref: 9451

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albus subsp. albus

full scientific name: Streptomyces albus subsp. albus (Rossi Doria 1891) Nagatsu et al. 1962

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
116204positiverod-shapedno

multimedia

  • @ref: 9451
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_40313.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9451GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
35230MEDIUM 122 - for StreptomycesyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (2.000 g);Starch maize (10.000 g)
9451GPHF-MEDIUM (DSMZ Medium 553)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium553.pdf
116204CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57
116204CIP Medium 122yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=122

culture temp

@refgrowthtypetemperaturerange
9451positivegrowth28mesophilic
35230positivegrowth30mesophilic
67770positivegrowth28mesophilic
116204positivegrowth30-45

Physiology and metabolism

oxygen tolerance

  • @ref: 116204
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-9(H6), MK-9(H8), MK-9(II,III,VIII,IX-H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1162044853esculin+hydrolysis
11620417632nitrate-reduction
11620416301nitrite-reduction

metabolite production

  • @ref: 116204
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
116204oxidase-
116204beta-galactosidase+3.2.1.23
116204alcohol dehydrogenase-1.1.1.1
116204gelatinase+/-
116204amylase-
116204DNase+
116204catalase+1.11.1.6
116204lecithinase+
116204lysine decarboxylase-4.1.1.18
116204ornithine decarboxylase-4.1.1.17
116204urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51877C15:00.615
    51877C16:04.916
    51877C18:00.918
    51877C14:0 ISO2.213.618
    51877C15:0 ANTEISO27.214.711
    51877C15:0 ISO10.914.621
    51877C16:0 iso21.815.626
    51877C16:1 ISO H1.315.461
    51877C17:0 anteiso16.116.722
    51877C17:0 CYCLO1.616.888
    51877C17:0 iso616.629
    51877C17:1 ω9c ANTEISO1.616.525
    51877C18:1 ω9c1.417.769
    51877C18:2 ω6,9c/C18:0 ANTE3.317.724
    51877Unidentified0.413.24
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116204-+++-++---++-+-+++--

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116204+-+-+------++--+--++------+----+-+---+--+------+++---------+------------+--+---++--------++--++----

Isolation, sampling and environmental information

isolation

  • @ref: 9451
  • sample type: straw

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Plant#Straw
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_961.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15;96_103;97_110;98_751;99_961&stattab=map
  • Last taxonomy: Streptomyces albus subclade
  • 16S sequence: JX486031
  • Sequence Identity:
  • Total samples: 204
  • soil counts: 170
  • aquatic counts: 8
  • animal counts: 22
  • plant counts: 4

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
94511Risk group (German classification)
1162041Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albus clone E1 16S ribosomal RNA gene, partial sequenceAY262299503ena1888
20218Streptomyces albus subsp. albus 16S rRNA gene, type strain DSM 40313TAJ6216021499ena67257
20218Streptomyces albus strain DSM 40313 16S ribosomal RNA gene, partial sequenceAY9997431358ena1888
20218Streptomyces albus partial 16S rRNAX531631358ena1888
20218Streptomyces albus subsp. albus gene for 16S ribosomal RNA, partial sequence, strain: JCM 4450D44147121ena67257
20218Streptomyces albus subsp. albus gene for 16S rRNA, partial sequence, strain: NBRC 13014AB1842571475ena67257
20218Streptomyces albus subsp. albus gene for 16S rRNA, partial sequence, strain: NBRC 3710AB1847811481ena67257
9451Streptomyces albus subsp. albus strain NRRL B-1811 16S ribosomal RNA gene, partial sequenceJX4860311499ena67257

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces albus NBRC 130141888.3wgspatric1888
66792Streptomyces albus NBRC 130142651869737draftimg1888
67770Streptomyces albus NBRC 13014GCA_000813365scaffoldncbi1888
67770Streptomyces albus subsp. albus NRRL B-1811GCA_000725885contigncbi67257

GC content

  • @ref: 67770
  • GC-content: 72.7
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno94.034no
gram-positiveyes91.325no
anaerobicno99.431no
aerobicyes92.973no
halophileno82.791no
spore-formingyes94.13no
glucose-utilyes87.787no
flagellatedno98.125no
thermophileno90.122no
glucose-fermentno87.171no

External links

@ref: 9451

culture collection no.: DSM 40313, ATCC 25426, ATCC 3004, BCRC 10802, CBS 410.63, CBS 924.69, CCUG 33990, CECT 3077, CGMCC 4.1640, CIP 104432, ETH 20200, HUT 6613, IFM 1119, IMET 40241, ISP 5313, JCM 4177, JCM 4450, KCTC 1082, NBRC 13014, NBRC 3710, NCIMB 9558, NRRL B-1811, NRRL B-2208, RIA 1206, VKM Ac-35, IMRU 3004, IFO 13014, IFO 3710, NBIMCC 2385, VTT E-991426, KCC S-0177

straininfo link

  • @ref: 84052
  • straininfo: 319085

literature

Pubmed-IDtitleauthorsjournalDOIyearmeshtopictopic2
14467640Proposal to designate strain ATCC 3004 (IMRU 3004) as the neotype strain of Streptomyces albus (Rossi-Doria) Waksman and Henrici.LYONS AJ Jr, PRIDHAM TGJ Bacteriol10.1128/jb.83.2.370-380.19621962*Gram-Positive Bacteria, *Spores, Bacterial, *Streptomyces, *Streptomyces griseus
21571936Streptomyces panacagri sp. nov., isolated from soil of a ginseng field.Cui Y, Baek SH, Wang L, Lee HG, Cui C, Lee ST, Im WTInt J Syst Evol Microbiol10.1099/ijs.0.029942-02011Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryPhylogenyGenetics
24277863Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov.Labeda DP, Doroghazi JR, Ju KS, Metcalf WWInt J Syst Evol Microbiol10.1099/ijs.0.058107-02013Algorithms, Bacterial Typing Techniques, DNA, Bacterial/genetics, Databases, Nucleic Acid, Genes, Bacterial, Likelihood Functions, Molecular Sequence Data, *Multilocus Sequence Typing, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/geneticsPhylogenyTranscriptome
25657283Draft Genome Sequence of Streptomyces albus Strain NBRC 13014T, the Type Species of the Genus Streptomyces.Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Fujita NGenome Announc10.1128/genomeA.01527-142015Genetics
27055525Cell wall glycopolymers of Streptomyces albus, Streptomyces albidoflavus and Streptomyces pathocidini.Shashkov AS, Streshinskaya GM, Tul'skaya EM, Senchenkova SN, Baryshnikova LM, Dmitrenok AS, Ostash BE, Fedorenko VAAntonie Van Leeuwenhoek10.1007/s10482-016-0691-82016Cell Wall/metabolism, Lysine/metabolism, Magnetic Resonance Spectroscopy/methods, Phosphates/isolation & purification/metabolism, Polysaccharides, Bacterial/isolation & purification/*metabolism, Streptomyces/chemistry/*metabolism, Sugar Acids/isolation & purification/metabolism, Teichoic Acids/isolation & purification/metabolism, Uronic Acids/isolation & purification/metabolismMetabolismEnzymology
30427301Streptomyces reniochalinae sp. nov. and Streptomyces diacarni sp. nov., from marine sponges.Li L, Wang J, Zhou YJ, Lin HW, Lu YHInt J Syst Evol Microbiol10.1099/ijsem.0.0031092018Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistryPhylogenyTranscriptome
32915250Streptomyces boncukensis sp. nov., isolated from saltern soil.Tatar D, Veyisoglu A, Saygin H, Sahin NArch Microbiol10.1007/s00203-020-02036-12020DNA, Bacterial/genetics, Diaminopimelic Acid/metabolism, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Species Specificity, Streptomyces/*classification/genetics/isolation & purification, TurkeyPhylogenyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9451Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40313)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40313
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35230Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16340
51877Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 33990)https://www.ccug.se/strain?id=33990
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84052Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID319085.1StrainInfo: A central database for resolving microbial strain identifiers
116204Curators of the CIPCollection of Institut Pasteur (CIP 104432)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104432