Name: Streptomyces albofaciens 27-A
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14933

Type strain:

Species: Streptomyces albofaciens

Strain Designation: 27-A, 5268

Culture col. no.: DSM 40268, ATCC 23873, ATCC 25184, CBS 612.68, IFO 12833, ISP 5268, JCM 4342, NBRC 12833, RIA 1189, BCRC 12072, CGMCC 4.1655, CIP 104425, IMET 43518, KCTC 9686, LMG 8597, MTCC 6920, NCIMB 10975, NRRL B-12172, VKM Ac-724, HACC 222

Strain history: CIP <- 1995, JCM <- KCC <- IFO <- SAJ <- ISP: strain 5268 <- M.J. Thirumalachar: strain 27-A

NCBI tax ID(s): 1306175 (strain), 66866 (species)

SI-ID 12877

LMG 8597, ATCC 23873, ATCC 25184, CCRC 12072, CIP 104425, DSM 40268, IFO 12833, IMET 43518, JCM 4342, NCIMB 10975, NRRL B-12172, VKM Ac-724, KCTC 9686, KCTC 9747, AS 4.1655, NBRC 12833, BCRC 12072, NCIB 10975, CGMCC 4.1655, CBS 612.68

Special Collections

Other strains from Streptomyces albofaciens

Section

Streptomyces albofaciens 27-A is a facultative anaerobe, spore-forming bacterium that produces antibiotic compounds and was isolated from Soil.

antibiotic compound production
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces albofaciens**
	Full Scientific Name (LPSN)	Streptomyces albofaciens Thirumalachar and Bhatt 1960 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #116192]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %91.703

[Ref.: #116192]	Cell shape	rod-shaped

[Ref.: #116192]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9421]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9421]

Culture medium growth

[Ref.: #9421]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9421]

Culture medium composition

expand / minimize

[Ref.: #41171]

Culture medium

MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum

[Ref.: #41171]

Culture medium growth

[Ref.: #41171]

Culture medium composition

expand / minimize

[Ref.: #116192]

Culture medium

CIP Medium 57

[Ref.: #116192]

Culture medium growth

[Ref.: #116192]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #116192]

Culture medium

CIP Medium 236

[Ref.: #116192]

Culture medium growth

[Ref.: #116192]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #9421]		growth	28 °C
[Ref.: #18576]		optimum	28 °C
[Ref.: #41171]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #116192]		growth	37-45 °C
[Ref.: #116192]	no	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #116192]

Oxygen tolerance

facultative anaerobe

[Ref.: #69480]	Ability of spore formation	yes Confidence in %91.036
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #9421]	Name of produced compound	oxytetracycline
[Ref.: #20216]	Name of produced compound	Oxytetracyclin

[Ref.: #67770]

Observation

quinones: MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #18576]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18576]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #116192]	esculin ChEBI	-	hydrolysis
[Ref.: #18576]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18576]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #18576]	mannitol ChEBI	+
[Ref.: #18576]	myo-inositol ChEBI	+
[Ref.: #116192]	nitrate ChEBI	+	reduction
[Ref.: #116192]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #18576]	raffinose ChEBI	+
[Ref.: #18576]	rhamnose ChEBI	-
[Ref.: #18576]	sucrose ChEBI	-
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #18576]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #116192]	indole ChEBI	no
[Ref.: #67770]	oxytetracycline ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #116192]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #116192]	amylase	+
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #116192]	beta-galactosidase	+	3.2.1.23
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #116192]	caseinase	-	3.4.21.50
[Ref.: #116192]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #116192]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116192]	gelatinase	+
[Ref.: #68368]	gelatinase	+		* from API 20E
[Ref.: #116192]	lecithinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #116192]	lipase	+
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #116192]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116192]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #116192]	tween esterase	+
[Ref.: #116192]	urease	+	3.5.1.5
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #18576]	134	+	+	-	-	+	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #116192]	662	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	+	-	+	-	-	+	+	+	-	-	+	+	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	+	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	+	+	+	+	+	+	-	+	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #18576]	236	not determinedn.d.	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	+	-
[Ref.: #116192]	7942	-	+	+	+	+	+	+	+	+	-	+	+	+	+	-	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil

[Ref.: #116192]	Sample type/isolated from	Environment, Soil
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #18576]	Biosafety level	1	German classification
[Ref.: #9421]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116192]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces albofaciens strain CGMCC 4.1655 16S ribosomal RNA gene, partial sequence	JN566024	1495	GenBank ENA	1306175 tax ID	*
[Ref.: #20218]	Streptomyces albofaciens gene for 16S rRNA	AB045880	1489	GenBank ENA	1306175 tax ID	*
[Ref.: #20218]	Streptomyces albofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4342	D44062	121	GenBank ENA	1306175 tax ID	*
[Ref.: #20218]	Streptomyces albofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12833	AB184179	1432	GenBank ENA	1306175 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces albofaciens JCM 4342 ATCC 23873	GCA_008634025	contig	GenBank ENA	1306175 tax ID
[Ref.: #66792]	Streptomyces albofaciens JCM 4342	GCA_001315345	contig	GenBank ENA	1306175 tax ID	*
[Ref.: #66792]	Streptomyces albofaciens JCM 4342	1306175.5	wgs	PATRIC	1306175 tax ID	*
[Ref.: #66792]	Streptomyces albofaciens JCM 4342 strain ATCC 23873	1306175.6	complete	PATRIC	1306175 tax ID	*
[Ref.: #66792]	Streptomyces albofaciens JCM 4342	2734481983	draft	JGI IMG/M	1306175 tax ID	*

[Ref.: #67770]

GC-content

68.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces albofaciens JCM 4342 strain ATCC 23873 PATRIC: 1306175.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces albofaciens JCM 4342 strain ATCC 23873 PATRIC: 1306175.6
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	91.703	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.037	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	91.036	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	81.795	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	85.1	no

Availability in culture collections External links

[Ref.: #9421]

Culture collection no.

DSM 40268, ATCC 23873, ATCC 25184, CBS 612.68, IFO 12833, ISP 5268, JCM 4342, NBRC 12833, RIA 1189, BCRC 12072, CGMCC 4.1655, CIP 104425, IMET 43518, KCTC 9686, LMG 8597, MTCC 6920, NCIMB 10975, NRRL B-12172, VKM Ac-724, HACC 222

[Ref.: #84042]

SI-ID 12877

References

#9421

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40268

#18576

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#41171 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#84042

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID12877.1 )

#116192 Collection of Institut Pasteur ; Curators of the CIP; CIP 104425
* These data were automatically processed and therefore are not curated

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Streptomyces albofaciens JCM 4342 strain ATCC 23873

Streptomyces albofaciens JCM 4342 strain ATCC 23873

Change proposal

Change proposal