Strain identifier

BacDive ID: 14933

Type strain: Yes

Species: Streptomyces albofaciens

Strain Designation: 27-A, 5268

Strain history: CIP <- 1995, JCM <- KCC <- IFO <- SAJ <- ISP: strain 5268 <- M.J. Thirumalachar: strain 27-A

NCBI tax ID(s): 1306175 (strain), 66866 (species)

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General

@ref: 9421

BacDive-ID: 14933

DSM-Number: 40268

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, spore-forming, mesophilic, antibiotic compound production

description: Streptomyces albofaciens 27-A is a facultative anaerobe, spore-forming, mesophilic bacterium that produces antibiotic compounds and was isolated from Soil.

NCBI tax id

NCBI tax idMatching level
1306175strain
66866species

strain history

@refhistory
9421<- E.B. Shirling, ISP <- M.J. Thirumalachar, 27-A
67770KCC S-0342 <-- IFO 12833 <-- SAJ <-- ISP 5268 <-- M. J. Thirumalachar 27-A.
116192CIP <- 1995, JCM <- KCC <- IFO <- SAJ <- ISP: strain 5268 <- M.J. Thirumalachar: strain 27-A

doi: 10.13145/bacdive14933.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces albofaciens
  • full scientific name: Streptomyces albofaciens Thirumalachar and Bhatt 1960 (Approved Lists 1980)

@ref: 9421

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces albofaciens

full scientific name: Streptomyces albofaciens Thirumalachar and Bhatt 1960

strain designation: 27-A, 5268

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no92.623
69480100positive
116192nopositiverod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9421GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
41171MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulumyesDistilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
116192CIP Medium 57yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=57
116192CIP Medium 236yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=236

culture temp

@refgrowthtypetemperaturerange
18576positiveoptimum28mesophilic
9421positivegrowth28mesophilic
41171positivegrowth30mesophilic
67770positivegrowth28mesophilic
116192positivegrowth37-45
116192nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 116192
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481yes100
69480yes100

compound production

@refcompound
9421oxytetracycline
20216Oxytetracyclin

observation

  • @ref: 67770
  • observation: quinones: MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1857617234glucose+
1857622599arabinose+
1857617992sucrose-
1857618222xylose-
1857617268myo-inositol+
1857629864mannitol+
1857628757fructose+
1857626546rhamnose-
1857616634raffinose+
1857662968cellulose+
683685291gelatin+hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis
1161924853esculin-hydrolysis
11619217632nitrate+reduction
11619216301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6777027701oxytetracyclineyes
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
11619235581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
116192beta-galactosidase+3.2.1.23
116192alcohol dehydrogenase-1.1.1.1
116192gelatinase+
116192amylase+
116192DNase+
116192caseinase-3.4.21.50
116192catalase+1.11.1.6
116192tween esterase+
116192lecithinase+
116192lipase+
116192lysine decarboxylase-4.1.1.18
116192ornithine decarboxylase-4.1.1.17
116192urease+3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)+
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase+3.4.11.3
68382trypsin+3.4.21.4
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- FucosidaseControl
18576+++++++++++++-++++-
116192++++++++-++++-++++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGEL
18576++--+-+--++

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
116192+++++----++----+--++------+-+--+++--++--+--------++--+-----++-----------++-----++---+----++++++-++-

Isolation, sampling and environmental information

isolation

@refsample type
67770Soil
116192Environment, Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
94211Risk group (German classification)
185761German classification
1161921Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Streptomyces albofaciens strain CGMCC 4.1655 16S ribosomal RNA gene, partial sequenceJN5660241495ena1306175
20218Streptomyces albofaciens gene for 16S rRNAAB0458801489ena1306175
20218Streptomyces albofaciens gene for 16S ribosomal RNA, partial sequence, strain: JCM 4342D44062121ena1306175
20218Streptomyces albofaciens gene for 16S rRNA, partial sequence, strain: NBRC 12833AB1841791432ena1306175

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces albofaciens JCM 4342GCA_001315345contigncbi1306175
66792Streptomyces albofaciens JCM 43421306175.5wgspatric1306175
66792Streptomyces albofaciens JCM 4342 strain ATCC 238731306175.6completepatric1306175
66792Streptomyces albofaciens JCM 43422734481983draftimg1306175
67770Streptomyces albofaciens JCM 4342 ATCC 23873GCA_008634025contigncbi1306175

GC content

  • @ref: 67770
  • GC-content: 68.8
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno92.727no
gram-positiveyes89.204no
anaerobicno99.087no
halophileno94.038no
spore-formingyes95.09no
thermophileno98.436no
glucose-utilyes89.226yes
aerobicyes90.866no
flagellatedno97.766no
glucose-fermentno91.534no

External links

@ref: 9421

culture collection no.: DSM 40268, ATCC 23873, ATCC 25184, CBS 612.68, IFO 12833, ISP 5268, JCM 4342, NBRC 12833, RIA 1189, BCRC 12072, CGMCC 4.1655, CIP 104425, IMET 43518, KCTC 9686, LMG 8597, MTCC 6920, NCIMB 10975, NRRL B-12172, VKM Ac-724, HACC 222

straininfo link

  • @ref: 84042
  • straininfo: 12877

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9421Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 40268)https://www.dsmz.de/collection/catalogue/details/culture/DSM-40268
18576Wink, J.http://www.dsmz.de/microorganisms/wink_pdf/DSM40268.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20216Curators of the HKIhttp://www.leibniz-hki.de/de/Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI)
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41171Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
84042Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID12877.1StrainInfo: A central database for resolving microbial strain identifiers
116192Curators of the CIPCollection of Institut Pasteur (CIP 104425)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104425