Name: Streptomyces afghaniensis 772
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14886

Type strain:

Species: Streptomyces afghaniensis

Strain Designation: 772

Culture col. no.: DSM 40228, ATCC 23871, CBS 610.68, IFO 12831, ISP 5228, JCM 4340, NBRC 12831, RIA 1169, BCRC 12056, CCT 5011, CGMCC 4.1689, IMET 42942, KCTC 9743, NRRL B-5621, VKM Ac-703

Strain history: KCC S-0340 <-- IFO 12831 <-- SAJ <-- ISP 5228 <-- M. Shimo 772.

NCBI tax ID(s): 66865 (species)

SI-ID 389331

ATCC 23871, IFO 12831, NRRL B-5621, DSM 40228, JCM 4340, CCRC 12056, CCT 5011, IMET 42942, VKM Ac-703, CBS 610.68, KCTC 9743, AS 4.1689, NBRC 12831, BCRC 12056, CGMCC 4.1689

Special Collections

Other strains from Streptomyces afghaniensis

Section

Streptomyces afghaniensis 772 is a spore-forming bacterium that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production
spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces afghaniensis**
	Full Scientific Name (LPSN)	Streptomyces afghaniensis Shimo et al. 1959 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #19427]	Colony color	Red brown
[Ref.: #19427]	Incubation period	10-14 days
[Ref.: #19427]	Cultivation medium used	ISP 2

[Ref.: #19427]	Colony color	Red brown
[Ref.: #19427]	Incubation period	10-14 days
[Ref.: #19427]	Cultivation medium used	ISP 3

[Ref.: #19427]	Colony color	Beige
[Ref.: #19427]	Incubation period	10-14 days
[Ref.: #19427]	Cultivation medium used	ISP 4

[Ref.: #19427]	Colony color	Beige
[Ref.: #19427]	Incubation period	10-14 days
[Ref.: #19427]	Cultivation medium used	ISP 5

[Ref.: #19427]	Colony color	Sepia brown
[Ref.: #19427]	Incubation period	10-14 days
[Ref.: #19427]	Cultivation medium used	ISP 6

[Ref.: #19427]	Colony color	Beige
[Ref.: #19427]	Incubation period	10-14 days
[Ref.: #19427]	Cultivation medium used	ISP 7

[Ref.: #19427]	Multicellular complex forming ability	yes
[Ref.: #19427]	Multicellular complex name	Aerial Mycelium
[Ref.: #19427]	Multicellular complex color	Cream
[Ref.: #19427]	Medium Name (multicellularity)	ISP 2

[Ref.: #19427]	Multicellular complex forming ability	yes
[Ref.: #19427]	Multicellular complex name	Aerial Mycelium
[Ref.: #19427]	Multicellular complex color	Agate grey
[Ref.: #19427]	Medium Name (multicellularity)	ISP 3

[Ref.: #19427]	Multicellular complex forming ability	yes
[Ref.: #19427]	Multicellular complex name	Aerial Mycelium
[Ref.: #19427]	Multicellular complex color	Agate grey
[Ref.: #19427]	Medium Name (multicellularity)	ISP 4

[Ref.: #19427]	Multicellular complex forming ability	no
[Ref.: #19427]	Medium Name (multicellularity)	ISP 5

[Ref.: #19427]	Multicellular complex forming ability	no
[Ref.: #19427]	Medium Name (multicellularity)	ISP 6

[Ref.: #19427]	Multicellular complex forming ability	no
[Ref.: #19427]	Medium Name (multicellularity)	ISP 7

Information on culture and growth conditions Culture and growth conditions

[Ref.: #9389]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #9389]

Culture medium growth

[Ref.: #9389]

Culture medium link

Medium recipe at MediaDive

[Ref.: #9389]

Culture medium composition

expand / minimize

[Ref.: #19427]

Culture medium

ISP 2

[Ref.: #19427]

Culture medium growth

[Ref.: #19427]

Culture medium composition

expand / minimize

[Ref.: #19427]

Culture medium

ISP 3

[Ref.: #19427]

Culture medium growth

[Ref.: #19427]

Culture medium composition

expand / minimize

[Ref.: #19427]

Culture medium

ISP 4

[Ref.: #19427]

Culture medium growth

[Ref.: #19427]

Culture medium composition

expand / minimize

[Ref.: #19427]

Culture medium

ISP 5

[Ref.: #19427]

Culture medium growth

[Ref.: #19427]

Culture medium composition

expand / minimize

[Ref.: #19427]

Culture medium

ISP 6

[Ref.: #19427]

Culture medium growth

[Ref.: #19427]

Culture medium composition

expand / minimize

[Ref.: #19427]

Culture medium

ISP 7

[Ref.: #19427]

Culture medium growth

[Ref.: #19427]

Culture medium composition

expand / minimize

[Ref.: #9389]

Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

[Ref.: #9389]

Culture medium growth

[Ref.: #9389]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #9389]	growth	28 °C
[Ref.: #19427]	optimum	28 °C
[Ref.: #67770]	growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

aerobe Confidence in %90.697

[Ref.: #69480]

Ability of spore formation

yes Confidence in %92.074

[Ref.: #9389]	Name of produced compound	taitomycin
[Ref.: #20216]	Name of produced compound	Taitomycin
[Ref.: #67770]	Name of produced compound	Taitomycin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #19427]	arabinose ChEBI	+
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19427]	cellulose ChEBI	+
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #19427]	fructose ChEBI	+
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #19427]	glucose ChEBI	+
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #19427]	mannitol ChEBI	+
[Ref.: #19427]	myo-inositol ChEBI	+
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #19427]	raffinose ChEBI	+
[Ref.: #19427]	rhamnose ChEBI	+
[Ref.: #19427]	sucrose ChEBI	+
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
[Ref.: #19427]	xylose ChEBI	-
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E, API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #19427]	291	+	+	+	+	+	-	+	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #19427]	355	not determinedn.d.	+	-	-	-	+	+	-	+	+	+	+	+	+	-	-	-	-	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #9389]	Sample type/isolated from	soil
[Ref.: #9389]	Country	Afghanistan
[Ref.: #9389]	Country ISO 3 Code	AFG
[Ref.: #9389]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Pahlavi
[Ref.: #67770]	Country	Afghanistan
[Ref.: #67770]	Country ISO 3 Code	AFG
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #9389]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #19427]	Biosafety level	1	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Streptomyces afghaniensis partial 16S rRNA gene, strain ISP 5228	AJ399483	1449	GenBank ENA	66865 tax ID	*
[Ref.: #20218]	Streptomyces afghaniensis gene for 16S ribosomal RNA, partial sequence, strain: JCM 4340	D44061	121	GenBank ENA	66865 tax ID	*
[Ref.: #20218]	Streptomyces afghaniensis gene for 16S rRNA, partial sequence, strain: NBRC 12831	AB184847	1475	GenBank ENA	66865 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces afghaniensis 772	GCA_000415505	scaffold	GenBank ENA	1283301 tax ID
[Ref.: #66792]	Streptomyces afghaniensis 772	1283301.3	wgs	PATRIC	1283301 tax ID	*
[Ref.: #66792]	Streptomyces afghaniensis 772	2545824777	draft	JGI IMG/M	1283301 tax ID	*

[Ref.: #67770]

GC-content

73.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces afghaniensis 772 PATRIC: 1283301.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.666	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.389	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.074	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	90.697	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87	no

Availability in culture collections External links

[Ref.: #9389]

Culture collection no.

DSM 40228, ATCC 23871, CBS 610.68, IFO 12831, ISP 5228, JCM 4340, NBRC 12831, RIA 1169, BCRC 12056, CCT 5011, CGMCC 4.1689, IMET 42942, KCTC 9743, NRRL B-5621, VKM Ac-703

[Ref.: #83995]

SI-ID 389331

References

#9389

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 40228

#19427

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20216

Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) Curators of the HKI: Collection Description Leibniz-Institut für Naturstoff-Forschung und Infektionsbiologie e. V. Hans-Knöll-Institut (HKI) .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83995

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID389331.1 )

* These data were automatically processed and therefore are not curated

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