Phyllobacterium myrsinacearum (CCUG 34964, LMG 1, CIP 108235)

Name: Phyllobacterium myrsinacearum (CCUG 34964, LMG 1, CIP 108235)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 148169

Type strain

Culture col. no. CCUG 34964 LMG 1 CIP 108235

NCBI tax ID(s) 28101

Special Collections CCUG CIP

Links

Phyllobacterium myrsinacearum CCUG 34964 is an aerobe bacterium that was isolated from Pavetta zimmermannia.

aerobe Bacteria

Name and taxonomic classification

SI-ID 127101

LMG 1t1,LMG 1,CCUG 34964,NCIB 12128,ATCC43591,DSM 5893,IAM13587,NCIMB 12128,CECT 4452,NBRC 100017,ATCC BAA-446,CIP 108235,HAMBI 1991,HAMBI 2264,KACC 10501,CFBP 5555,NCIB 121284,JCM 20934,NCPPB 4123

@ref 20215

Last LPSN update 2026-02-09 11:35:51

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Phyllobacteriaceae

Genus Phyllobacterium

Species Phyllobacterium myrsinacearum

Full scientific name Phyllobacterium myrsinacearum (ex Knösel 1962) Knösel 1984

Synonyms (1)

Phyllobacterium rubiacearum

BacDive ID	Other strains from **Phyllobacterium myrsinacearum** (7)	Type strain
11874	P. myrsinacearum DSM 5892, ATCC 43590, IAM 13584, JCM 20932, ... (type strain)
11875	P. myrsinacearum DSM 5893, ATCC 43591, LMG 1t1, NCIMB 12128, ...
148168	P. myrsinacearum CCUG 34963, LMG 3, JCM 20933, IAM 13586
153955	P. myrsinacearum CCUG 51764
156835	P. myrsinacearum CCUG 65979
156868	P. myrsinacearum CCUG 66194
163014	P. myrsinacearum JCM 20931, CCUG 34961, IAM 13583, LMG 2.1

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
52420	positive	growth	25-30

Physiology and metabolism

Oxygen tolerance

52420

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	+	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	+	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	+	assimilation	from API 20NE
68369	25115 ChEBI	malate	+	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	-	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	-		from API zym

Fatty acid profile

Metadata FA analysis

@ref

52420

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	47.1	17.824
C19:0 CYCLO ω8c	20	18.9
C16:0	8.8	16
Unidentified	4.8	18.076
C16:0 3OH	3.9	17.52
C18:0	3.3	18
C18:1 2OH	3	19.088
C14:0 3OH/C16:1 ISO I	2.2	15.485
C18:0 3OH	2.2	19.551
C20:0	1.9	20
C16:1 ω7c	1.2	15.819
C17:0	0.9	17
Unidentified	0.7	13.238

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
52420	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
52420	-	-	-	-	+	-	-	-	+	+	+	+	+	+	+	-	-	+	+	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
52420	Pavetta zimmermannia	Stuttgart-Hohenheim	Germany	DEU	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#52420	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 34964
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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