Phyllobacterium myrsinacearum (DSM 5892, ATCC 43590, IAM 13584)

Name: Phyllobacterium myrsinacearum (DSM 5892, ATCC 43590, IAM 13584)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 11874

Type strain

Culture col. no. DSM 5892 ATCC 43590 IAM 13584 JCM 20932 LMG 2t2 6 more

NCBI tax ID(s) 28101

Special Collections DSMZ CCUG JCM CIP Literature strains

History DSMZ <- ATCC <- NCIMB <- J. De Ley, LMG <- D. Knösel JCM <-- IAM 13584 <-- LMG 2(t2) <-- D. Knösel. CIP <- 2004, NCIMB <- LMG <- D. Knösel, Stuttgart Hohenheim, Germany

Links

Phyllobacterium myrsinacearum DSM 5892 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from leaf nodule of Ardisia crispa in tropical greenhouse.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 3839

CCUG 34961,CCUG 34962,LMG 6738,NCIB 12127,LMG 2t2,LMG 2t1,ATCC 43590,LMG 2,DSM 5892,NCIMB 12127,IAM13584,CECT 4451,NBRC 100019,IAM 13583,CIP 108241,JCM 20932,CFBP 5554,JCM 20931,ICMP 19891

@ref 20215

Last LPSN update 2026-05-29 08:27:40

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Hyphomicrobiales

Family Bartonellaceae

Genus Phyllobacterium

Species Phyllobacterium myrsinacearum

Full scientific name Phyllobacterium myrsinacearum (ex Knösel 1962) Knösel 1984

Synonyms (1)

Phyllobacterium rubiacearum

BacDive ID	Other strains from **Phyllobacterium myrsinacearum** (7)	Type strain
11875	P. myrsinacearum DSM 5893, ATCC 43591, LMG 1t1, NCIMB 12128, ...
148168	P. myrsinacearum CCUG 34963, LMG 3, JCM 20933, IAM 13586
148169	P. myrsinacearum CCUG 34964, LMG 1, CIP 108235
153955	P. myrsinacearum CCUG 51764
156835	P. myrsinacearum CCUG 65979
156868	P. myrsinacearum CCUG 66194
163014	P. myrsinacearum JCM 20931, CCUG 34961, IAM 13583, LMG 2.1

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
22935	negative	rod-shaped
22936		rod-shaped
121214	negative	rod-shaped
125439	negative		98.355
125438	negative		98

Colony morphology

@ref	Colony color	Hemolysis ability
22935	white or cream-coloured
121214		0

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2350	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37420	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121214	CIP Medium 72	Medium recipe at CIP
121214	CIP Medium 328	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2350	positive	growth	28
22935	positive	growth	28
37420	positive	growth	25
67770	positive	growth	30
121214	positive	growth	10-30
121214	negative	growth	37
121214	negative	growth	41
121214	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
121214	obligate aerobe
125439	obligate aerobe	96.144

Spore formation

@ref	Spore formation	Confidence
125439		99.489

Halophily

@ref	Salt	Growth	Tested relation	Concentration
121214	NaCl	positive	growth	0-2 %
121214	NaCl		growth	4 %
121214	NaCl		growth	6 %
121214	NaCl		growth	8 %
121214	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
22935	28340 ChEBI	2-aminobutyrate	+	growth
22935	30916 ChEBI	2-oxoglutarate	+	growth
22935	37054 ChEBI	3-hydroxybutyrate	+	growth
22935	17879 ChEBI	4-hydroxybenzoate	+	growth
22935	58143 ChEBI	5-dehydro-D-gluconate	+	growth
22935	17750 ChEBI	betaine	+	growth
22935	16383 ChEBI	cis-aconitate	+	growth
22935	16947 ChEBI	citrate	+	growth
22937	16947 ChEBI	citrate	+	growth
121214	16947 ChEBI	citrate	+	carbon source
22935	18024 ChEBI	D-galacturonic acid	+	growth
22935	30612 ChEBI	D-glucarate	+	growth
22935	15748 ChEBI	D-glucuronate	+	growth
22935	15588 ChEBI	D-malate	+	growth
22935	16899 ChEBI	D-mannitol	+	growth
22935	16024 ChEBI	D-mannose	+	growth
22935	16443 ChEBI	D-tagatose	+	growth
22935	17113 ChEBI	erythritol	-	growth
22935	4853 ChEBI	esculin	+	hydrolysis
121214	4853 ChEBI	esculin	-	hydrolysis
22935	16000 ChEBI	ethanolamine	+	growth
22935	29806 ChEBI	fumarate	+	growth
22935	16537 ChEBI	galactarate	-	growth
22935	16813 ChEBI	galactitol	+	growth
22935	5291 ChEBI	gelatin	-	hydrolysis
22935	17859 ChEBI	glutarate	+	growth
22935	33871 ChEBI	glycerate	+	growth
121214	606565 ChEBI	hippurate	+	hydrolysis
22935	16977 ChEBI	L-alanine	+	growth
22935	30849 ChEBI	L-arabinose	+	growth
22935	18403 ChEBI	L-arabitol	+	growth
22935	29991 ChEBI	L-aspartate	+	growth
22935	15589 ChEBI	L-malate	+	growth
22935	17115 ChEBI	L-serine	+	growth
22935	17895 ChEBI	L-tyrosine	+	growth
22935	15792 ChEBI	malonate	+/-	growth
22935	68428 ChEBI	maltitol	+	growth
22935	17306 ChEBI	maltose	+	growth
22935	61993 ChEBI	maltotriose	+	growth
22935	6731 ChEBI	melezitose	+/-	growth
22935	55507 ChEBI	methyl alpha-D-galactoside	+	growth
22935	320061 ChEBI	methyl alpha-D-glucopyranoside	+	growth
22935	506227 ChEBI	N-acetyl-D-glucosamine	+	growth
22936	17632 ChEBI	nitrate	+	reduction
121214	17632 ChEBI	nitrate	-	reduction
121214	17632 ChEBI	nitrate	-	respiration
121214	16301 ChEBI	nitrite	-	reduction
22935	18394 ChEBI	palatinose	+	growth
22935	17272 ChEBI	propionate	+/-	growth
22935	36241 ChEBI	protocatechuate	+	growth
22935	26490 ChEBI	quinate	+	growth
22937	16634 ChEBI	raffinose	+	builds acid from
22937	26546 ChEBI	rhamnose	+	builds acid from
22935	15963 ChEBI	ribitol	+	growth
22937	15963 ChEBI	ribitol	+	builds acid from
22935	30031 ChEBI	succinate	+	growth
22937	17992 ChEBI	sucrose	+	builds acid from
22935	15708 ChEBI	trans-aconitate	+	growth
22937	27082 ChEBI	trehalose	+	builds acid from
22935	18123 ChEBI	trigonelline	+	growth
22935	53426 ChEBI	tween 80	-	hydrolysis
22935	16199 ChEBI	urea	+	hydrolysis
22935	17151 ChEBI	xylitol	+	growth

Antibiotic resistance

@ref	Metabolite	ChEBI	Group ID
121214	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
22937	neomycin	7507	0
22937	oxytetracycline	27701	0
22937	polymyxin b	8309	0

Metabolite production

@ref	Chebi-ID	Metabolite	Production
22935	35581 ChEBI	indole
121214	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
121214	15688 ChEBI	acetoin	-
121214	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
121214	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121214	amylase	-
22935	beta-galactosidase	-	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
121214	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
121214	caseinase	-	3.4.21.50
121214	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
22935	cytochrome oxidase	+	1.9.3.1
22935	DNase	-
121214	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
121214	gamma-glutamyltransferase	+	2.3.2.2
22935	gelatinase	-
121214	gelatinase	-
121214	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
121214	lipase	-
68382	lipase (C 14)	-		from API zym
121214	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
121214	ornithine decarboxylase	-	4.1.1.17
121214	oxidase	+
121214	phenylalanine ammonia-lyase	-	4.3.1.24
121214	protease	-
68382	trypsin	+	3.4.21.4	from API zym
121214	tryptophan deaminase	-
121214	tween esterase	-
22935	urease	+	3.5.1.5
121214	urease	+	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121214	-	+	+	+	-	+	-	-	+	-	+	+	-	-	-	+	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
121214	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	+	+	+	+	+	+	+	+	+	+	-	+	-	+	+	+	+	+	+	+	+	+	+	-	-	-	+	-	-	-	-	-	-	+	+	+	+	-	+	+	+	+	-	-	+	+	-	+	-	-	-	-	-	-	-	+	+	-	+	-	-	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Greenhouse
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
2350	leaf nodule of Ardisia crispa in tropical greenhouse	Ardisia crispa	west	Germany	DEU	Europe
67770	Leaf nodule
121214	Plant, Leaf nodule, Ardisia crispa		Stuttgart Hohenheim	Germany	DEU	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
2350	1	Risk group (German classification) According to TRBA 466
121214	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM421738v1 assembly for Phyllobacterium myrsinacearum DSM 5892	scaffold	GCA_004217385	28101.8	2802429686	28101	73.07
66792	ASM318223v1 assembly for Phyllobacterium myrsinacearum IAM 13584	scaffold	GCA_003182235	28101.5	2767802441	28101	70.96
66792	ASM298055v1 assembly for Phyllobacterium myrsinacearum DSM 5892	contig	GCA_002980555	28101.3	8118988500	28101	70.03

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
2350	Phyllobacterium myrsinacearum gene for 16S rRNA, strain: IAM 13584	D12789	1438	28101
2350	Phyllobacterium myrsinacearum strain STM 948 16S ribosomal RNA gene, partial sequence	AY785315	1401	28101
124043	Phyllobacterium myrsinacearum gene for 16S rRNA, partial sequence, strain: NBRC 100019.	AB681132	1410	28101
124043	Phyllobacterium myrsinacearum strain NBRC 100019 16S ribosomal RNA gene, partial sequence.	KX881446	886	28101

GC content

@ref	GC-content (mol%)	Method
22936	60.3-61.3
67770	60.3-61.3	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM421738v1 assembly for Phyllobacterium myrsinacearum DSM 5892
BV-BRC: 28101.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	gram_stain	BacteriaNetⓘ	negative	98.36	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.14	no
125439	motility	BacteriaNetⓘ	yes	50.15	no
125439	spore_formation	BacteriaNetⓘ	no	99.49	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Phyllobacterium myrsinacearum IAM 13584
NCBI: GCA_003182235.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	96.30	no
125438	aerobic	aerobicⓘ	yes	84.83	yes
125438	spore-forming	spore-formingⓘ	no	88.40	no
125438	thermophilic	thermophileⓘ	no	97.75	yes
125438	flagellated	motile2+ⓘ	no	52.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	An alternative interpretation of nanobacteria-induced biomineralization.	Cisar JO, Xu DQ, Thompson J, Swaim W, Hu L, Kopecko DJ.	Proc Natl Acad Sci U S A	10.1073/pnas.97.21.11511	2000
Enzymology	Analysis of stable low-molecular-weight RNA profiles of members of the family Rhizobiaceae.	Velazquez E, Cruz-Sanchez JM, Mateos PF, Martinez-Molina E.	Appl Environ Microbiol	10.1128/aem.64.4.1555-1559.1998	1998
Pathogenicity	Expression of tfx and sensitivity to the rhizobial peptide antibiotic trifolitoxin in a taxonomically distinct group of alpha-proteobacteria including the animal pathogen Brucella abortus.	Triplett EW, Breil BT, Splitter GA.	Appl Environ Microbiol	10.1128/aem.60.11.4163-4166.1994	1994
	Isolation, Biochemical and Genomic Characterization of Glyphosate Tolerant Bacteria to Perform Microbe-Assisted Phytoremediation.	Massot F, Gkorezis P, Van Hamme J, Marino D, Trifunovic BS, Vukovic G, d'Haen J, Pintelon I, Giulietti AM, Merini L, Vangronsveld J, Thijs S.	Front Microbiol	10.3389/fmicb.2020.598507	2020
Phylogeny	Discordant phylogenies within the rrn loci of Rhizobia.	van Berkum P, Terefework Z, Paulin L, Suomalainen S, Lindstrom K, Eardly BD.	J Bacteriol	10.1128/jb.185.10.2988-2998.2003	2003
	Growth Efficiency of Chlorella sorokiniana in Synthetic Media and Unsterilized Domestic Wastewater.	Bulynina SS, Ziganshina EE, Ziganshin AM.	BioTech (Basel)	10.3390/biotech12030053	2023
Phylogeny	Mining the Microbiome of Key Species from African Savanna Woodlands: Potential for Soil Health Improvement and Plant Growth Promotion.	Maquia IS, Fareleira P, Videira E Castro I, Brito DRA, Soares R, Chauque A, Ferreira-Pinto MM, Lumini E, Berruti A, Ribeiro NS, Marques I, Ribeiro-Barros AI.	Microorganisms	10.3390/microorganisms8091291	2020
Metabolism	Use of Endophytic and Rhizosphere Bacteria To Improve Phytoremediation of Arsenic-Contaminated Industrial Soils by Autochthonous Betula celtiberica.	Mesa V, Navazas A, Gonzalez-Gil R, Gonzalez A, Weyens N, Lauga B, Gallego JLR, Sanchez J, Pelaez AI.	Appl Environ Microbiol	10.1128/aem.03411-16	2017
	Growth Characteristics of Chlorella sorokiniana in a Photobioreactor during the Utilization of Different Forms of Nitrogen at Various Temperatures.	Ziganshina EE, Bulynina SS, Ziganshin AM.	Plants (Basel)	10.3390/plants11081086	2022
	Climatic Aridity Gradient Modulates the Diversity of the Rhizosphere and Endosphere Bacterial Microbiomes of Opuntia ficus-indica.	Karray F, Gargouri M, Chebaane A, Mhiri N, Mliki A, Sayadi S.	Front Microbiol	10.3389/fmicb.2020.01622	2020
Phylogeny	Phyllobacterium myrsinacearum (subjective synonym Phyllobacterium rubiacearum) emend.	Mergaert J, Cnockaert MC, Swings J	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1821	2002
	Zhengella sedimenti sp. nov. and Phycobacter sedimenti sp. nov., two novel bacteria isolated from coastal sediment with genomic and metabolic analysis.	Lin PR, Deng LJ, Zhang HZ, Liu L, Liu TH, Lu DC, Du ZJ.	Antonie Van Leeuwenhoek	10.1007/s10482-025-02120-w	2025
Phylogeny	Phyllobacterium pellucidum sp. nov., isolated from soil.	Park Y, Ten LN, Maeng S, Chang Y, Jung HY, Kim MK	Arch Microbiol	10.1007/s00203-021-02205-w	2021
Phylogeny	Notoacmeibacter marinus gen. nov., sp. nov., isolated from the gut of a limpet and proposal of Notoacmeibacteraceae fam. nov. in the order Rhizobiales of the class Alphaproteobacteria.	Huang Z, Guo F, Lai Q, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001951	2017
Phylogeny	Oricola cellulosilytica gen. nov., sp. nov., a cellulose-degrading bacterium of the family Phyllobacteriaceae isolated from surface seashore water, and emended descriptions of Mesorhizobium loti and Phyllobacterium myrsinacearum.	Hameed A, Shahina M, Lai WA, Lin SY, Young LS, Liu YC, Hsu YH, Young CC	Antonie Van Leeuwenhoek	10.1007/s10482-014-0370-6	2015

References

#2350	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5892
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#22935	Sophie Mantelin, Marion Fischer-Le Saux, Frédéric Zakhia, Gilles Béna, Sophie Bonneau, Habib Jeder, Philippe de Lajudie, Jean-Claude Cleyet-Marel: Emended description of the genus Phyllobacterium and description of four novel species associated with plant roots: Phyllobacterium bourgognense sp. nov., Phyllobacterium ifriqiyense sp. nov., Phyllobacterium leguminum sp. nov. and Phyllobacterium brassicacearum sp. nov.. IJSEM 56: 827 - 839 2006 ( DOI 10.1099/ijs.0.63911-0 , PubMed 16585703 )
#22936	Joris Mergaert, Margo C Cnockaert, Jean Swings: Phyllobacterium myrsinacearum (subjective synonym Phyllobacterium rubiacearum) emend.. IJSEM 52: 1821 - 1823 2002 ( DOI 10.1099/00207713-52-5-1821 , PubMed 12361292 )
#22937	Angel Valverde, Encarna Velázquez, Félix Fernández-Santos, Nieves Vizcaíno, Raúl Rivas, Pedro F. Mateos, Eustoquio Martínez-Molina, José Mariano Igual, Anne Willems: Phyllobacterium trifolii sp. nov., nodulating Trifolium and Lupinus in Spanish soils. IJSEM 55: 1985 - 1989 2005 ( DOI 10.1099/ijs.0.63551-0 , PubMed 16166699 )
#37420	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#121214	Collection of Institut Pasteur ; Curators of the CIP; CIP 108241
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Phyllobacterium myrsinacearum (DSM 5892, ATCC 43590, IAM 13584)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_004217385

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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