Streptococcus infantis O-122 is a microaerophile, Gram-positive, coccus-shaped bacterium that was isolated from human tooth surface.
Gram-positive coccus-shaped microaerophile genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Streptococcaceae |
| Genus Streptococcus |
| Species Streptococcus infantis |
| Full scientific name Streptococcus infantis Kawamura et al. 1998 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 4746 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 4746 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 40272 | MEDIUM 6 - Columbia agar with 10 % horse blood | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |||
| 120104 | CIP Medium 6 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 93.384 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 120104 | NaCl | growth | 6.5 % |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 4746 | A11 | A1alpha L-Lys-direct |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68381 | 16899 ChEBI | D-mannitol | - | builds acid from | from API rID32STR |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68381 | 16988 ChEBI | D-ribose | - | builds acid from | from API rID32STR |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68381 | 16443 ChEBI | D-tagatose | - | builds acid from | from API rID32STR |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 120104 | 4853 ChEBI | esculin | - | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 120104 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68381 | 6731 ChEBI | melezitose | - | builds acid from | from API rID32STR |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68381 | 28053 ChEBI | melibiose | - | builds acid from | from API rID32STR |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | - | builds acid from | from API rID32STR |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 120104 | 17632 ChEBI | nitrate | - | reduction | |
| 120104 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68381 | 16634 ChEBI | raffinose | - | builds acid from | from API rID32STR |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68381 | 30911 ChEBI | sorbitol | - | builds acid from | from API rID32STR |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68381 | 27082 ChEBI | trehalose | - | builds acid from | from API rID32STR |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | from API rID32STR |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 120104 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68381 | alkaline phosphatase | - | 3.1.3.1 | from API rID32STR |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68381 | alpha-galactosidase | - | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 120104 | beta-galactosidase | - | 3.2.1.23 | |
| 68381 | beta-glucosidase | - | 3.2.1.21 | from API rID32STR |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 120104 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120104 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 68381 | glycyl tryptophan arylamidase | + | from API rID32STR | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 120104 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120104 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120104 | oxidase | - | ||
| 68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 | from API rID32STR |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| 68382 | valine arylamidase | + | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120104 | not determinedn.d. | - | - | - | - | - | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | +/- | + | + | + | +/- | + | + | - | + | + | - | - | - | +/- | - | - | - | + | - | - | - | - | - | - | - | - | - |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 4746 | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | - | |
| 4746 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | - | - | - | - | - | - | - | - | |
| 4746 | - | - | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | + | - | - | - | + | - | - | + | + | - | - | - | - | - | - | |
| 4746 | - | - | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | + | + | - | + | + | + | - | + | + | - | - | - | - | - | - |
| @ref | Sample type | Host species | Geographic location | Country | Country ISO 3 Code | Continent | Sampling date | Isolation date | |
|---|---|---|---|---|---|---|---|---|---|
| 4746 | human tooth surface | Homo sapiens | Japan | Japan | JPN | Asia | |||
| 54944 | Human pharynx,3-year-old healthy male | Homo sapiens | Japan | JPN | Asia | 1990 | |||
| 67770 | Human tooth surface | Homo sapiens | |||||||
| 120104 | Human, Pharynx | Homo sapiens | Japan | JPN | Asia | 1990 |
Global distribution of 16S sequence AY485603 (>99% sequence identity) for Streptococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM18746v1 assembly for Streptococcus infantis ATCC 700779 | scaffold | 889204 | 72.62 | ||||
| 67770 | SinfantisSK959v1.0 assembly for Streptococcus infantis ATCC 700779 | contig | 889204 | 68.13 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 4746 | Streptococcus infantis strain ATCC 700779 16S small subunit ribosomal RNA gene, partial sequence | AY485603 | 1468 | 889204 | ||
| 67770 | Streptococcus infantis gene for 16S rRNA, partial sequence | AB008315 | 1338 | 889204 | ||
| 67770 | Streptococcus infantis strain CCUG 39817 16S ribosomal RNA gene, partial sequence | EU156759 | 1329 | 889204 | ||
| 67770 | Streptococcus infantis gene for 16S ribosomal RNA, partial sequence, strain: JCM 10157 | LC096227 | 1485 | 68892 | ||
| 124043 | Streptococcus infantis strain CCUG 39817 16S-23S ribosomal RNA intergenic spacer, partial sequence. | DQ204503 | 248 | 68892 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | gram_stain | BacteriaNetⓘ | variable | 66.47 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 93.42 | no |
| 125439 | motility | BacteriaNetⓘ | no | 85.63 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 93.38 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 89.96 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 91.77 | yes |
| 125438 | aerobic | aerobicⓘ | no | 97.86 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 86.53 | no |
| 125438 | thermophilic | thermophileⓘ | no | 96.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 90.00 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Reference-guided assembly of metagenomes with MetaCompass. | Luan T, Cepeda-Espinoza VP, Liu B, Bowen Z, Ayyangar U, Almeida M, Koren S, Treangen TJ, Porter A, Pop M. | Cell Rep Methods | 10.1016/j.crmeth.2025.101186 | 2025 | |
| Pathogenicity | Insights into Within-Host Evolution and Dynamics of Oral and Intestinal Streptococci Unveil Niche Adaptation. | Abdelbary MMH, Hatting M, Dahlhausen A, Bott A, Conrads G. | Int J Mol Sci | 10.3390/ijms252413507 | 2024 | |
| Evolutionary Relationships Between Dysregulated Genes in Oral Squamous Cell Carcinoma and Oral Microbiota. | Fang Y, Yang Y, Liu C. | Front Cell Infect Microbiol | 10.3389/fcimb.2022.931011 | 2022 | ||
| Genetics | Nisin-like biosynthetic gene clusters are widely distributed across microbiomes. | Hourigan D, Field D, Murray E, Sugrue I, O'Connor PM, Hill C, Ross RP. | mBio | 10.1128/mbio.01545-25 | 2025 | |
| Partially hydrolyzed, whey-based infant formula with six human milk oligosaccharides, B. infantis LMG11588, and B. lactis CNCM I-3446 is safe, well tolerated, and improves gut health: a staged analysis of a randomized trial. | Picaud JC, Claris O, Gil-Campos M, De La Cueva IS, Cornette L, Alliet P, Leke A, Castanet M, Piloquet H, de Halleux V, Mitanchez D, Vandenplas Y, Maton P, Jochum F, Olbertz D, Policarpo SN, Lavalle L, Fumero C, Rodriguez-Garcia P, Moll JM, Silva-Zolezzi I, Zemrani B, Hays NP, Sprenger N, Miranda-Mallea J. | Front Nutr | 10.3389/fnut.2025.1628847 | 2025 | ||
| Combining Bifidobacterium longum subsp. infantis and human milk oligosaccharides synergistically increases short chain fatty acid production ex vivo. | De Bruyn F, James K, Cottenet G, Dominick M, Katja J. | Commun Biol | 10.1038/s42003-024-06628-1 | 2024 | ||
| Identification of Clinically Relevant Streptococcus and Enterococcus Species Based on Biochemical Methods and 16S rRNA, sodA, tuf, rpoB, and recA Gene Sequencing. | Kosecka-Strojek M, Wolska M, Zabicka D, Sadowy E, Miedzobrodzki J. | Pathogens | 10.3390/pathogens9110939 | 2020 | ||
| Microbiological, chemical and rheological properties of low fat set yoghurt produced with exopolysaccharide (EPS) producing Bifidobacterium strains | Prasanna PHP, Grandison AS, Charalampopoulos D. | Food Res Int | 10.1016/j.foodres.2012.11.016 | 2013 | ||
| Evidence of immunomodulatory effects of a novel probiotic, Bifidobacterium longum bv. infantis CCUG 52486. | You J, Yaqoob P. | FEMS Immunol Med Microbiol | 10.1111/j.1574-695x.2012.01014.x | 2012 | ||
| Screening human intestinal Bifidobacterium strains for growth, acidification, EPS production and viscosity potential in low-fat milk | Prasanna PHP, Grandison AS, Charalampopoulos D. | Int Dairy J | 10.1016/j.idairyj.2011.09.008 | 2012 | ||
| Enzymology | Emulsifying, rheological and physicochemical properties of exopolysaccharide produced by Bifidobacterium longum subsp. infantis CCUG 52486 and Bifidobacterium infantis NCIMB 702205. | Prasanna PH, Bell A, Grandison AS, Charalampopoulos D. | Carbohydr Polym | 10.1016/j.carbpol.2012.05.075 | 2012 | |
| Effect of dairy-based protein sources and temperature on growth, acidification and exopolysaccharide production of Bifidobacterium strains in skim milk | Prasanna PHP, Grandison AS, Charalampopoulos D. | Food Res Int | 10.1016/j.foodres.2012.01.004 | 2012 | ||
| Phylogeny | Phylogenetic, Functional and Safety Features of 1950s B. infantis Strains. | Duboux S, Ngom-Bru C, De Bruyn F, Bogicevic B. | Microorganisms | 10.3390/microorganisms10020203 | 2022 | |
| Streptococcus infantis, Streptococcus mitis, and Streptococcus oralis Strains With Highly Similar cps5 Loci and Antigenic Relatedness to Serotype 5 Pneumococci. | Pimenta F, Gertz RE, Park SH, Kim E, Moura I, Milucky J, Rouphael N, Farley MM, Harrison LH, Bennett NM, Bigogo G, Feikin DR, Breiman R, Lessa FC, Whitney CG, Rajam G, Schiffer J, da Gloria Carvalho M, Beall B. | Front Microbiol | 10.3389/fmicb.2018.03199 | 2018 | ||
| Transcriptome | Gene expression of bacterial collagenolytic proteases in root caries. | Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T. | J Oral Microbiol | 10.1080/20002297.2018.1424475 | 2018 | |
| Minocycline resistance in an oral Streptococcus infantis isolate is encoded by tet(S) on a novel small, low copy number plasmid. | Ciric L, Brouwer MS, Mullany P, Roberts AP. | FEMS Microbiol Lett | 10.1111/1574-6968.12410 | 2014 | ||
| Cell factory for gamma-aminobutyric acid (GABA) production using Bifidobacterium adolescentis. | Altaib H, Kozakai T, Badr Y, Nakao H, El-Nouby MAM, Yanase E, Nomura I, Suzuki T. | Microb Cell Fact | 10.1186/s12934-021-01729-6 | 2022 | ||
| Probing oral microbial functionality--expression of spxB in plaque samples. | Zhu L, Xu Y, Ferretti JJ, Kreth J. | PLoS One | 10.1371/journal.pone.0086685 | 2014 | ||
| Two mechanisms of oral malodor inhibition by zinc ions. | Suzuki N, Nakano Y, Watanabe T, Yoneda M, Hirofuji T, Hanioka T. | J Appl Oral Sci | 10.1590/1678-7757-2017-0161 | 2018 | ||
| The Role and Regulatory Network of the CiaRH Two-Component System in Streptococcal Species. | He LY, Le YJ, Guo Z, Li S, Yang XY. | Front Microbiol | 10.3389/fmicb.2021.693858 | 2021 | ||
| Exopolysaccharide Produced by Pediococcus pentosaceus E8: Structure, Bio-Activities, and Its Potential Application. | Jiang G, He J, Gan L, Li X, Xu Z, Yang L, Li R, Tian Y. | Front Microbiol | 10.3389/fmicb.2022.923522 | 2022 | ||
| Priority effects shape the structure of infant-type Bifidobacterium communities on human milk oligosaccharides. | Ojima MN, Jiang L, Arzamasov AA, Yoshida K, Odamaki T, Xiao J, Nakajima A, Kitaoka M, Hirose J, Urashima T, Katoh T, Gotoh A, van Sinderen D, Rodionov DA, Osterman AL, Sakanaka M, Katayama T. | ISME J | 10.1038/s41396-022-01270-3 | 2022 | ||
| Pathogenicity | Identification of Anion Channels Responsible for Fluoride Resistance in Oral Streptococci. | Men X, Shibata Y, Takeshita T, Yamashita Y. | PLoS One | 10.1371/journal.pone.0165900 | 2016 | |
| Enzymology | Characterization of a purified beta-fructofuranosidase from Bifidobacterium infantis ATCC 15697. | Warchol M, Perrin S, Grill JP, Schneider F. | Lett Appl Microbiol | 10.1046/j.1472-765x.2002.01224.x | 2002 | |
| Pathogenicity | Rice Defensin OsAFP1 is a New Drug Candidate against Human Pathogenic Fungi. | Ochiai A, Ogawa K, Fukuda M, Ohori M, Kanaoka T, Tanaka T, Taniguchi M, Sagehashi Y. | Sci Rep | 10.1038/s41598-018-29715-w | 2018 | |
| In vitro Probiotic Potential and Safety Evaluation (Hemolytic, Cytotoxic Activity) of Bifidobacterium Strains Isolated from Raw Camel Milk. | Yasmin I, Saeed M, Khan WA, Khaliq A, Chughtai MFJ, Iqbal R, Tehseen S, Naz S, Liaqat A, Mehmood T, Ahsan S, Tanweer S. | Microorganisms | 10.3390/microorganisms8030354 | 2020 | ||
| Metabolism | Gut bacteria identified in colorectal cancer patients promote tumourigenesis via butyrate secretion. | Okumura S, Konishi Y, Narukawa M, Sugiura Y, Yoshimoto S, Arai Y, Sato S, Yoshida Y, Tsuji S, Uemura K, Wakita M, Matsudaira T, Matsumoto T, Kawamoto S, Takahashi A, Itatani Y, Miki H, Takamatsu M, Obama K, Takeuchi K, Suematsu M, Ohtani N, Fukunaga Y, Ueno M, Sakai Y, Nagayama S, Hara E. | Nat Commun | 10.1038/s41467-021-25965-x | 2021 | |
| Phylogeny | recA-based PCR assay for accurate differentiation of Streptococcus pneumoniae from other viridans streptococci. | Zbinden A, Kohler N, Bloemberg GV. | J Clin Microbiol | 10.1128/jcm.01450-10 | 2011 | |
| Metabolism | A Novel Actin Binding Drug with In Vivo Efficacy. | Ravichandran A, Geng M, Hull KG, Li J, Romo D, Lu SE, Albee A, Nutter C, Gordon DM, Ghannoum MA, Lockless SW, Smith L. | Antimicrob Agents Chemother | 10.1128/aac.01585-18 | 2019 | |
| Recent Development of Probiotic Bifidobacteria for Treating Human Diseases. | Chen J, Chen X, Ho CL. | Front Bioeng Biotechnol | 10.3389/fbioe.2021.770248 | 2021 | ||
| Metabolism | Age-Related Changes in the Natural Killer Cell Response to Seasonal Influenza Vaccination Are Not Influenced by a Synbiotic: a Randomised Controlled Trial. | Przemska-Kosicka A, Childs CE, Maidens C, Dong H, Todd S, Gosney MA, Tuohy KM, Yaqoob P. | Front Immunol | 10.3389/fimmu.2018.00591 | 2018 | |
| Effect of S-PRG Eluate on Biofilm Formation and Enzyme Activity of Oral Bacteria. | Yoneda M, Suzuki N, Masuo Y, Fujimoto A, Iha K, Yamada K, Iwamoto T, Hirofuji T. | Int J Dent | 10.1155/2012/814913 | 2012 | ||
| Novel antimicrobial activities of a peptide derived from a Japanese soybean fermented food, Natto, against Streptococcus pneumoniae and Bacillus subtilis group strains. | Kitagawa M, Shiraishi T, Yamamoto S, Kutomi R, Ohkoshi Y, Sato T, Wakui H, Itoh H, Miyamoto A, Yokota SI. | AMB Express | 10.1186/s13568-017-0430-1 | 2017 | ||
| Pathogenicity | Insights into physiological and genetic mupirocin susceptibility in bifidobacteria. | Serafini F, Bottacini F, Viappiani A, Baruffini E, Turroni F, Foroni E, Lodi T, van Sinderen D, Ventura M. | Appl Environ Microbiol | 10.1128/aem.02540-10 | 2011 | |
| Bactericidal action of photogenerated singlet oxygen from photosensitizers used in plaque disclosing agents. | Ishiyama K, Nakamura K, Ikai H, Kanno T, Kohno M, Sasaki K, Niwano Y. | PLoS One | 10.1371/journal.pone.0037871 | 2012 | ||
| Genetics | Phylogenomic and MALDI-TOF MS analysis of Streptococcus sinensis HKU4T reveals a distinct phylogenetic clade in the genus Streptococcus. | Teng JL, Huang Y, Tse H, Chen JH, Tang Y, Lau SK, Woo PC. | Genome Biol Evol | 10.1093/gbe/evu232 | 2014 | |
| Surface properties of dental zirconia ceramics affected by ultrasonic scaling and low-temperature degradation. | Nakazawa K, Nakamura K, Harada A, Shirato M, Inagaki R, Ortengren U, Kanno T, Niwano Y, Egusa H. | PLoS One | 10.1371/journal.pone.0203849 | 2018 | ||
| Metabolism | Live and let die: Hydrogen peroxide production by the commensal flora and its role in maintaining a symbiotic microbiome. | Redanz S, Cheng X, Giacaman RA, Pfeifer CS, Merritt J, Kreth J. | Mol Oral Microbiol | 10.1111/omi.12231 | 2018 | |
| Pathogenicity | Molecular Assay for Detection of Genetic Markers Associated with Decreased Susceptibility to Cephalosporins in Neisseria gonorrhoeae. | Peterson SW, Martin I, Demczuk W, Bharat A, Hoang L, Wylie J, Allen V, Lefebvre B, Tyrrell G, Horsman G, Haldane D, Garceau R, Wong T, Mulvey MR. | J Clin Microbiol | 10.1128/jcm.00493-15 | 2015 | |
| Metabolism | Complementary Mechanisms for Degradation of Inulin-Type Fructans and Arabinoxylan Oligosaccharides among Bifidobacterial Strains Suggest Bacterial Cooperation. | Riviere A, Selak M, Geirnaert A, Van den Abbeele P, De Vuyst L. | Appl Environ Microbiol | 10.1128/aem.02893-17 | 2018 | |
| Metabolism | Purification and characterisation of the extracellular cholesterol oxidase enzyme from Enterococcus hirae. | Yehia HM, Hassanein WA, Ibraheim SM. | BMC Microbiol | 10.1186/s12866-015-0517-2 | 2015 | |
| Impact of ageing and a synbiotic on the immune response to seasonal influenza vaccination; a randomised controlled trial. | Enani S, Przemska-Kosicka A, Childs CE, Maidens C, Dong H, Conterno L, Tuohy K, Todd S, Gosney M, Yaqoob P. | Clin Nutr | 10.1016/j.clnu.2017.01.011 | 2018 | ||
| Streptococcus thermophilus ST28 ameliorates colitis in mice partially by suppression of inflammatory Th17 cells. | Ogita T, Nakashima M, Morita H, Saito Y, Suzuki T, Tanabe S. | J Biomed Biotechnol | 10.1155/2011/378417 | 2011 | ||
| Effect of a synbiotic on the response to seasonal influenza vaccination is strongly influenced by degree of immunosenescence. | Przemska-Kosicka A, Childs CE, Enani S, Maidens C, Dong H, Dayel IB, Tuohy K, Todd S, Gosney MA, Yaqoob P. | Immun Ageing | 10.1186/s12979-016-0061-4 | 2016 | ||
| Probiotic modulation of dendritic cell function is influenced by ageing. | You J, Dong H, Mann ER, Knight SC, Yaqoob P. | Immunobiology | 10.1016/j.imbio.2013.08.012 | 2014 | ||
| The principal fucosylated oligosaccharides of human milk exhibit prebiotic properties on cultured infant microbiota. | Yu ZT, Chen C, Kling DE, Liu B, McCoy JM, Merighi M, Heidtman M, Newburg DS. | Glycobiology | 10.1093/glycob/cws138 | 2013 | ||
| Metabolism | The ability of bifidobacteria to degrade arabinoxylan oligosaccharide constituents and derived oligosaccharides is strain dependent. | Riviere A, Moens F, Selak M, Maes D, Weckx S, De Vuyst L. | Appl Environ Microbiol | 10.1128/aem.02853-13 | 2014 | |
| Genetics | Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems. | O'Callaghan A, Bottacini F, O'Connell Motherway M, van Sinderen D. | BMC Genomics | 10.1186/s12864-015-1968-4 | 2015 | |
| Pathogenicity | Resistant starches types 2 and 4 have differential effects on the composition of the fecal microbiota in human subjects. | Martinez I, Kim J, Duffy PR, Schlegel VL, Walter J. | PLoS One | 10.1371/journal.pone.0015046 | 2010 | |
| Metabolism | Broad conservation of milk utilization genes in Bifidobacterium longum subsp. infantis as revealed by comparative genomic hybridization. | LoCascio RG, Desai P, Sela DA, Weimer B, Mills DA. | Appl Environ Microbiol | 10.1128/aem.00675-10 | 2010 | |
| Enzymology | Detection of human intestinal catalase-negative, Gram-positive cocci by rRNA-targeted reverse transcription-PCR. | Kubota H, Tsuji H, Matsuda K, Kurakawa T, Asahara T, Nomoto K. | Appl Environ Microbiol | 10.1128/aem.03132-09 | 2010 | |
| Metabolism | Kinetic analysis of bifidobacterial metabolism reveals a minor role for succinic acid in the regeneration of NAD+ through its growth-associated production. | Van der Meulen R, Adriany T, Verbrugghe K, De Vuyst L. | Appl Environ Microbiol | 10.1128/aem.00146-06 | 2006 | |
| Streptococcus taonis sp. nov., a novel bacterial species isolated from a blood culture of a patient. | Lee CY, Chan CK, Chida M, Miyashita M, Lee YS, Wu HC, Chang YC, Lin WT, Chen YS. | Arch Microbiol | 10.1007/s00203-024-03884-x | 2024 | ||
| Identification and characterisation of carbapenem-resistant Streptococcus nidrosiense sp. nov. isolated from blood culture. | Ronning TG, Olaisen C, As CG, Afset JE, Haugan MS. | New Microbes New Infect | 10.1016/j.nmni.2024.101473 | 2024 | ||
| Phylogeny | Streptococcus peroris sp. nov. and Streptococcus infantis sp. nov., new members of the Streptococcus mitis group, isolated from human clinical specimens. | Kawamura Y, Hou XG, Todome Y, Sultana F, Hirose K, Shu SE, Ezaki T, Ohkuni H | Int J Syst Bacteriol | 10.1099/00207713-48-3-921 | 1998 | |
| Phylogeny | Noncontiguous finished genome sequence and description of Streptococcus timonensis sp. nov. isolated from the human stomach. | Ricaboni D, Mailhe M, Lagier JC, Michelle C, Armstrong N, Bittar F, Vitton V, Benezech A, Raoult D, Million M | New Microbes New Infect | 10.1016/j.nmni.2016.11.013 | 2016 |
| #4746 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 12492 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #40272 | ; Curators of the CIP; |
| #54944 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 39817 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120104 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105949 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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