Name: Virgibacillus pantothenticus B 21
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1474

Type strain:

Species: Virgibacillus pantothenticus

Strain Designation: B 21, 3028

Culture col. no.: DSM 26, ATCC 14576, CCM 2049, LMG 7129, NCIB 8775, NCTC 8162, CCUG 7424, CIP 51.24, IAM 11061, CN 3028, NRS B21, JCM 20334, BCRC 14681, CCEB 635, CECT 42, NBRC 102447, NCAIM B.01092, NCFB 1765, NCIMB 8775, NRRL NRS-1321, OUT 8418, PCM 454, VKM B-1244, VKM B-507, NCDO 1765, NRRL: NRS-1321

Strain history: CIP <- 1951, H. Proom, Wellcome Res. Lab., Beckenham, UK: strain 3028

NCBI tax ID(s): 1473 (species)

SI-ID 13587

LMG 7129, ATCC 14576, CCM 2049, CCUG 7424, CECT 42, DSM 26, IAM 11061, NCFB 1765, NCIB 8775, NCTC 8162, NCDO 1765, NRRL NRS-1321, NCIMB 8775, VKM B-507, VKM B-1244, CIP 51.24, CCRC 14681, NCAIM B.01092, KCTC 3539, BCRC 14681, CCT 0537, HAMBI 476, KCTC 3860, CFBP 4270, NCIM 2476, NBRC 102447, JCM 20334, NRRL 1321

Special Collections

Other strains from Virgibacillus pantothenticus

Section

Virgibacillus pantothenticus B 21 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from soil.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Virgibacillus*
	Species	**Virgibacillus pantothenticus**
	Full Scientific Name (LPSN)	Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998

Synonym

Bacillus pantothenticus

Information on morphological and physiological properties Morphology

[Ref.: #23061]	Gram stain	positive
[Ref.: #121534]	Gram stain	positive

[Ref.: #23061]	Cell length	2.0-8.0 mm

[Ref.: #23061]	Cell width	0.5-0.7 mm

[Ref.: #23061]	Cell shape	rod-shaped
[Ref.: #121534]	Cell shape	rod-shaped

[Ref.: #23061]	Motility	yes
[Ref.: #121534]	Motility	yes

[Ref.: #23061]	Colony size	1.0-4.0 mm
[Ref.: #23061]	Colony color	creamy-grey
[Ref.: #23061]	Colony shape	circular
[Ref.: #23061]	Incubation period	2 days
[Ref.: #23061]	Cultivation medium used	trypticase soy agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23061]

Culture medium

trypticase soy agar

[Ref.: #23061]

Culture medium growth

[Ref.: #2027]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #2027]

Culture medium growth

[Ref.: #2027]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2027]

Culture medium composition

expand / minimize

[Ref.: #38435]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #38435]

Culture medium growth

[Ref.: #38435]

Culture medium composition

expand / minimize

[Ref.: #121534]

Culture medium

CIP Medium 72

[Ref.: #121534]

Culture medium growth

[Ref.: #121534]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121534]

Culture medium

CIP Medium 3

[Ref.: #121534]

Culture medium growth

[Ref.: #121534]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #2027]	growth	30 °C
[Ref.: #23061]	growth	15.0-50.0 °C
[Ref.: #23061]	optimum	37.0 °C
[Ref.: #38435]	growth	30 °C
[Ref.: #67770]	growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #23061]	Oxygen tolerance	facultative anaerobe
[Ref.: #121534]	Oxygen tolerance	facultative anaerobe

[Ref.: #23061]	Spore description	spherical to ellipsoidal,terminal or sometimes subterminal, in swollen sporangia
[Ref.: #23061]	Type of spore	endospore
[Ref.: #23061]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.906

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #23061]		NaCl		growth	4.0	%
[Ref.: #23061]		NaCl		growth	10.0	%

[Ref.: #23061]	Murein short key	A31
[Ref.: #23061]	Murein types	A1gamma m-Dpm-direct

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23061]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23061]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #23061]	amygdalin ChEBI	-	builds gas from
[Ref.: #23061]	amygdalin ChEBI	+	builds acid from
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	arbutin ChEBI	-	builds gas from
[Ref.: #23061]	arbutin ChEBI	+	builds acid from
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	casein	+	hydrolysis
[Ref.: #23061]	cellobiose ChEBI	-	builds gas from
[Ref.: #23061]	cellobiose ChEBI	+	builds acid from
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	D-arabinose ChEBI	-	builds gas from
[Ref.: #23061]	D-arabinose ChEBI	+	builds acid from
[Ref.: #23061]	D-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	D-fructose ChEBI	-	builds gas from
[Ref.: #23061]	D-fructose ChEBI	+	builds acid from
[Ref.: #23061]	D-fucose ChEBI	-	builds acid from
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	D-glucose ChEBI	-	builds gas from
[Ref.: #23061]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	D-lyxose ChEBI	-	builds acid from
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	D-mannose ChEBI	-	builds gas from
[Ref.: #23061]	D-mannose ChEBI	+	builds acid from
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	D-tagatose ChEBI	-	builds gas from
[Ref.: #23061]	D-tagatose ChEBI	+	builds acid from
[Ref.: #68371]	D-tagatose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	D-xylose ChEBI	-	builds acid from
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	erythritol ChEBI	-	builds acid from
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	galactitol ChEBI	-	builds acid from
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	galactose ChEBI	-	builds gas from
[Ref.: #23061]	galactose ChEBI	+	builds acid from
[Ref.: #23061]	gelatin ChEBI	+	hydrolysis
[Ref.: #23061]	gentiobiose ChEBI	-	builds acid from
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	gluconate ChEBI	-	builds acid from
[Ref.: #23061]	glycerol ChEBI	-	builds gas from
[Ref.: #23061]	glycerol ChEBI	+	builds acid from
[Ref.: #23061]	glycogen ChEBI	-	builds acid from
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	inulin ChEBI	-	builds acid from
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	L-arabinose ChEBI	-	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	L-arabitol ChEBI	-	builds acid from
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	L-fucose ChEBI	-	builds acid from
[Ref.: #68371]	L-rhamnose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	L-sorbose ChEBI	-	builds acid from
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	L-xylose ChEBI	-	builds acid from
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	lactose ChEBI	-	builds acid from
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	maltose ChEBI	-	builds gas from
[Ref.: #23061]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	mannitol ChEBI	-	builds acid from
[Ref.: #23061]	melezitose ChEBI	-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	melibiose ChEBI	-	builds acid from
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	methyl alpha-D-glucopyranoside ChEBI	-	builds gas from
[Ref.: #23061]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	methyl alpha-D-mannoside ChEBI	-	builds gas from
[Ref.: #23061]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	myo-inositol ChEBI	-	builds acid from
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	N-acetylglucosamine ChEBI	-	builds gas from
[Ref.: #23061]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	nitrate ChEBI	-	reduction
[Ref.: #121534]	nitrate ChEBI	+	reduction
[Ref.: #121534]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	raffinose ChEBI	-	builds acid from
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	rhamnose ChEBI	-	builds gas from
[Ref.: #23061]	rhamnose ChEBI	+	builds acid from
[Ref.: #23061]	ribitol ChEBI	-	builds acid from
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23061]	ribose ChEBI	-	builds gas from
[Ref.: #23061]	ribose ChEBI	+	builds acid from
[Ref.: #23061]	salicin ChEBI	-	builds gas from
[Ref.: #23061]	salicin ChEBI	+	builds acid from
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	sorbitol ChEBI	-	builds acid from
[Ref.: #23061]	starch ChEBI	-	builds gas from
[Ref.: #23061]	starch ChEBI	+	builds acid from
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	sucrose ChEBI	-	builds gas from
[Ref.: #23061]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	trehalose ChEBI	-	builds gas from
[Ref.: #23061]	trehalose ChEBI	+	builds acid from
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #23061]	turanose ChEBI	-	builds gas from
[Ref.: #23061]	turanose ChEBI	+	builds acid from
[Ref.: #23061]	xylitol ChEBI	-	builds acid from
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #23061]	acetoin ChEBI	no
[Ref.: #23061]	hydrogen sulfide ChEBI	yes
[Ref.: #121534]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #23061]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #23061]	arginine dihydrolase	-	3.5.3.6
[Ref.: #23061]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #23061]	catalase	+	1.11.1.6
[Ref.: #121534]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #121534]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #121534]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #121534]	11778	not determinedn.d.	+/-	-	+/-	-	+	-	-	-	-	+	+	+/-	+	-	+	-	-	-	-	-	+	+	+	+	+	+	-	+	-	-	+	+	-	-	-	+	-	-	-	+/-	-	+	-	+/-	-	-	+/-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #121534]	12586	-	-	+	+	-	+	-	-	-	-	-	+	-	-	-	+	-	-	-	-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	lipoate biosynthesis	100	5 of 5
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	L-lactaldehyde degradation	100	3 of 3
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	propanol degradation	100	7 of 7
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	starch degradation	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	leucine metabolism	84.62	11 of 13
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	purine metabolism	80.85	76 of 94
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	citric acid cycle	78.57	11 of 14
[Ref.: #66794]	tetrahydrofolate metabolism	78.57	11 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	heme metabolism	78.57	11 of 14
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	alanine metabolism	75.86	22 of 29
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	lysine metabolism	69.05	29 of 42
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	CO2 fixation in Crenarchaeota	66.67	6 of 9
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	oxidative phosphorylation	64.84	59 of 91
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	degradation of hexoses	61.11	11 of 18
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	phenylacetate degradation (aerobic)	60	3 of 5
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	lipid metabolism	58.06	18 of 31
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	53.85	7 of 13
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	biotin biosynthesis	50	2 of 4
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	myo-inositol biosynthesis	50	5 of 10
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	glycogen biosynthesis	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	sulfate reduction	46.15	6 of 13
[Ref.: #66794]	isoprenoid biosynthesis	46.15	12 of 26
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	ascorbate metabolism	45.45	10 of 22
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	cellulose degradation	40	2 of 5
[Ref.: #66794]	coenzyme M biosynthesis	40	4 of 10
[Ref.: #66794]	creatinine degradation	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	dTDPLrhamnose biosynthesis	37.5	3 of 8
[Ref.: #66794]	d-xylose degradation	36.36	4 of 11
[Ref.: #66794]	degradation of sugar acids	36	9 of 25
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	phenylpropanoid biosynthesis	30.77	4 of 13
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	29.41	5 of 17
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	3-phenylpropionate degradation	26.67	4 of 15
[Ref.: #66794]	vitamin E metabolism	25	1 of 4
[Ref.: #66794]	carnitine metabolism	25	2 of 8
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	catecholamine biosynthesis	25	1 of 4
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	vitamin B12 metabolism	23.53	8 of 34
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
[Ref.: #66794]	allantoin degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2027]	Sample type/isolated from	soil
[Ref.: #2027]	Geographic location (country and/or sea, region)	Southern England
[Ref.: #2027]	Country	United Kingdom
[Ref.: #2027]	Country ISO 3 Code	GBR
[Ref.: #2027]	Continent	Europe

[Ref.: #44993]	Sample type/isolated from	Soil,garden

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe

[Ref.: #121534]	Sample type/isolated from	Environment, Soil, garden
[Ref.: #121534]	Country	United Kingdom
[Ref.: #121534]	Country ISO 3 Code	GBR
[Ref.: #121534]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2027]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121534]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Virgibacillus pantothenticus gene for 16S rRNA, partial sequence, strain: IAM 11061	D16275	1491	GenBank ENA	1473 tax ID
[Ref.: #67770]	Bacillus pantothenticus DNA for 16S ribosomal RNA, partial sequence	D78477	1448	GenBank ENA	1473 tax ID
[Ref.: #67770]	Virgibacillus pantothenticus gene for 16S rRNA, partial sequence, strain: NBRC 102447	AB681789	1490	GenBank ENA	1473 tax ID
[Ref.: #124043]	Virgibacillus pantothenticus gene for 16S rRNA, partial sequence.	AB006932	291	GenBank ENA	1473 tax ID	*
[Ref.: #20218]	Virgibacillus pantothenticus clone BPANTO-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	AF478073	651	GenBank ENA	1473 tax ID	*
[Ref.: #124043]	B.pantothenticus 16S ribosomal RNA	X60627	1439	GenBank ENA	1473 tax ID	*
[Ref.: #20218]	Virgibacillus pantothenticus isolate Vpa1 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU723672	651	GenBank ENA	1473 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Virgibacillus pantothenticus DSM 26	GCA_900156795	scaffold	GenBank ENA	1473 tax ID
[Ref.: #67770]	Virgibacillus pantothenticus DSM 26	GCA_001189575	scaffold	GenBank ENA	1473 tax ID

[Ref.: #23061]	GC-content	36.9 mol%
[Ref.: #2027]	GC-content	36.9 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #2027]	GC-content	36.8 mol%	Buoyant density centrifugation (BD)
[Ref.: #67770]	GC-content	38.3 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Virgibacillus pantothenticus DSM 26 NCBI: GCA_900156795.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	76.115	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.828	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	64.502	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.906	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.647	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	82.736	no

Availability in culture collections External links

[Ref.: #2027]

Culture collection no.

DSM 26, ATCC 14576, CCM 2049, LMG 7129, NCIB 8775, NCTC 8162, CCUG 7424, CIP 51.24, IAM 11061, CN 3028, NRS B21, JCM 20334, BCRC 14681, CCEB 635, CECT 42, NBRC 102447, NCAIM B.01092, NCFB 1765, NCIMB 8775, NRRL NRS-1321, OUT 8418, PCM 454, VKM B-1244, VKM B-507, NCDO 1765, NRRL: NRS-1321

[Ref.: #71120]

SI-ID 13587

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequence of Virgibacillus pantothenticus DSM 26T (ATCC 14576), a Mesophilic and Halotolerant Bacterium Isolated from Soil.	Wang JP, Liu B, Liu GH, Chen DJ, Zhu YJ, Chen Z, Che JM	Genome Announc	10.1128/genomeA.01064-15	2015	*
Phylogeny	Virgibacillus salarius sp. nov., a halophilic bacterium isolated from a Saharan salt lake.	Hua NP, Hamza-Chaffai A, Vreeland RH, Isoda H, Naganuma T	Int J Syst Evol Microbiol	10.1099/ijs.0.65693-0	2008	*

References

#2027

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#23061

M. Heyndrickx,L. Lebbe,K. Kersters,B. Hoste,R. De Wachter,P. De Vos,G. Forsyth,N. A. Logan: Proposal of Virgibacillus proomii sp. nov. and emended description of Virgibacillus pantothenticus (Proom and Knight 1950) Heyndrickx et al. 1998. IJSEM 49: 1083 - 1090 1999 ( DOI 10.1099/00207713-49-3-1083 , PubMed 10425765 )

#38435 ; Curators of the CIP;
#44993 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 7424

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71120

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID13587.1 )

#121534 Collection of Institut Pasteur ; Curators of the CIP; CIP 51.24

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Virgibacillus pantothenticus DSM 26

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