Workshop and Q&A October 6th

Strain identifier

BacDive ID: 1474

Type strain: Yes

Species: Virgibacillus pantothenticus

Strain Designation: B 21

Culture col. no.: DSM 26, ATCC 14576, CCM 2049, LMG 7129, NCIB 8775, NCTC 8162, CCUG 7424, CIP 51.24, IAM 11061, CN 3028, NRS B21, JCM 20334, BCRC 14681, CCEB 635, CECT 42, NBRC 102447, NCAIM B.01092, NCFB 1765, NCIMB 8775, NRRL NRS-1321, OUT 8418, PCM 454, VKM B-1244, VKM B-507

Strain history: IAM 11061 <-- ATCC 14576 <-- R. E. Gordon <-- N. R. Smith NRS 1321 <-- H. Proom CN 3028.

NCBI tax ID(s): 1473 (species)

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Virgibacillus pantothenticus B 21 is a facultative anaerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from soil.

  1. colony-forming
  2. Gram-positive
  3. motile
  4. rod-shaped
  5. spore-forming
  6. facultative anaerobe
  7. 16S sequence
  8. Bacteria
  9. genome sequence
  • Information on genomic background e.g. entries in nucleic sequence databass Sequence informationarrow_down
  • 16S Sequence information:
    Sequence accession descriptionarrow to sort Seq. accession numberarrow to sort Sequence length (bp)arrow to sort Sequence databasearrow to sort Associated NCBI tax IDarrow to sort
    [Ref.: #20218] Virgibacillus pantothenticus clone BPANTO-1R 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence AF478073 651 1473 tax ID *
    [Ref.: #20218] Virgibacillus pantothenticus isolate Vpa1 16S ribosomal RNA gene, partial sequence; 16S-23S internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence EU723672 651 1473 tax ID *
    [Ref.: #67770] Virgibacillus pantothenticus gene for 16S rRNA, partial sequence, strain: NBRC 102447 AB681789 1490 1473 tax ID
    [Ref.: #67770] Virgibacillus pantothenticus gene for 16S rRNA, partial sequence, strain: IAM 11061 D16275 1491 1473 tax ID
    [Ref.: #67770] Bacillus pantothenticus DNA for 16S ribosomal RNA, partial sequence D78477 1448 1473 tax ID
    Genome sequence information:
    Sequence accession descriptionarrow to sort Seq. accession numberarrow to sort Assembly level (bp)arrow to sort Sequence databasearrow to sort Associated NCBI tax IDarrow to sort
    [Ref.: #67770] Virgibacillus pantothenticus strain DSM 26, whole genome shotgun sequencing project FTOS00000000 1473 tax ID
    [Ref.: #67770] Virgibacillus pantothenticus strain DSM 26, whole genome shotgun sequencing project LGTO00000000 1473 tax ID
    [Ref.: #23061] GC-content 36.9 mol%  
    [Ref.: #2027] GC-content 36.9 mol%   thermal denaturation, midpoint method (Tm)
    [Ref.: #2027] GC-content 36.8 mol%   Buoyant density centrifugation (BD)
    [Ref.: #67770] GC-content 38.3 mol%   thermal denaturation, midpoint method (Tm)
  • Availability in culture collections External linksarrow_down
  • [Ref.: #2027] Culture collection no. DSM 26, ATCC 14576, CCM 2049, LMG 7129, NCIB 8775, NCTC 8162, CCUG 7424, CIP 51.24, IAM 11061, CN 3028, NRS B21, JCM 20334, BCRC 14681, CCEB 635, CECT 42, NBRC 102447, NCAIM B.01092, NCFB 1765, NCIMB 8775, NRRL NRS-1321, OUT 8418, PCM 454, VKM B-1244, VKM B-507
    [Ref.: #20218] Associated Passport(s) in StrainInfo 51887, 51880, 51882, 51879, 51891, 51892
    Literature:
    Titlearrow to sort Authorsarrow to sort Journalarrow to sort DOIarrow to sort Yeararrow to sort Mesharrow to sort Topicarrow to sort Topic2arrow to sort
    Virgibacillus salarius sp. nov., a halophilic bacterium isolated from a Saharan salt lake. Hua NP, Hamza-Chaffai A, Vreeland RH, Isoda H, Naganuma T Int J Syst Evol Microbiol 10.1099/ijs.0.65693-0 2008 Bacillaceae/chemistry/*classification/*genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genes, rRNA, Genotype, Molecular Sequence Data, Peptidoglycan/chemistry, Phenotype, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride, Tunisia, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology Phylogeny Genetics *
    Genome Sequence of Virgibacillus pantothenticus DSM 26T (ATCC 14576), a Mesophilic and Halotolerant Bacterium Isolated from Soil. Wang JP, Liu B, Liu GH, Chen DJ, Zhu YJ, Chen Z, Che JM Genome Announc 10.1128/genomeA.01064-15 2015 Genetics Phylogeny *

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