Name: Staphylococcus simiae CCUG 51256
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14665

Type strain:

Species: Staphylococcus simiae

Culture col. no.: CCUG 51256, DSM 17636, CCM 7213, CIP 108931, LMG 22723

Strain history: <- CCM <- D. Koukalova, Olomouc 25

NCBI tax ID(s): 911238 (strain), 308354 (species)

SI-ID 132706

LMG 22723, CCM 7213, DSM 17636, CCUG 51256, CIP 108931

Other strains from Staphylococcus simiae

S. simiae DSM 17637, CCM 7214, LMG 22724
S. simiae DSM 17638, CCM 7229, NRL CEM 04/471
S. simiae DSM 17639, CCM 7230, NRL CEM 04/479, ...
S. simiae CCUG 51257, CCM 7216

Section

Staphylococcus simiae CCUG 51256 is an anaerobe, mesophilic, Gram-positive animal pathogen that was isolated from faeces, South American squirrel monkey.

coccus-shaped
Gram-positive
anaerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Staphylococcus*
	Species	**Staphylococcus simiae**
	Full Scientific Name (LPSN)	Staphylococcus simiae Pant??ek et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31449]	Gram stain	positive

[Ref.: #31449]	Cell length	0.75 µm

[Ref.: #31449]	Cell width	0.75 µm

[Ref.: #31449]	Cell shape	coccus-shaped

[Ref.: #31449]	Motility	no

[Ref.: #7100]	Type of hemolysis	beta
[Ref.: #7100]	Hemolysis ability	1
[Ref.: #7100]	Incubation period	1-2 days

[Ref.: #31449]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7100]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #7100]

Culture medium growth

[Ref.: #7100]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7100]

Culture medium composition

expand / minimize

[Ref.: #7100]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #7100]

Culture medium growth

[Ref.: #7100]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7100]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7100]	growth	37 °C
[Ref.: #31449]	growth	15-45 °C
[Ref.: #31449]	optimum	30 °C
[Ref.: #59117]	growth	37 °C

[Ref.: #7100]	Temperature range	mesophilic
[Ref.: #31449]	Temperature range	mesophilic
[Ref.: #59117]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31449]	Oxygen tolerance	anaerobe
[Ref.: #59117]	Oxygen tolerance	aerobe

[Ref.: #31449]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31449]		NaCl		growth	12	%
[Ref.: #31449]		NaCl		optimum	12	%

[Ref.: #31449]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31449]	arabinose ChEBI	+	carbon source
[Ref.: #68375]	arabinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	arginine ChEBI	+	hydrolysis	* from API ID32STA
[Ref.: #68375]	cellobiose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-fructose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-glucose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannitol ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	D-mannose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	D-ribose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #68375]	esculin ChEBI	-	hydrolysis	* from API ID32STA
[Ref.: #31449]	fructose ChEBI	+	carbon source
[Ref.: #31449]	galactose ChEBI	+	carbon source
[Ref.: #31449]	glucose ChEBI	+	carbon source
[Ref.: #31449]	lactose ChEBI	+	carbon source
[Ref.: #68375]	lactose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #31449]	maltose ChEBI	+	carbon source
[Ref.: #68375]	maltose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #31449]	mannitol ChEBI	+	carbon source
[Ref.: #68375]	N-acetylglucosamine ChEBI	+	fermentation	* from API ID32STA
[Ref.: #31449]	nitrate ChEBI	+	reduction
[Ref.: #68375]	nitrate ChEBI	+	reduction	* from API ID32STA
[Ref.: #68375]	ornithine ChEBI	-	degradation	* from API ID32STA
[Ref.: #68375]	raffinose ChEBI	-	fermentation	* from API ID32STA
[Ref.: #31449]	sucrose ChEBI	+	carbon source
[Ref.: #68375]	sucrose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #31449]	trehalose ChEBI	+	carbon source
[Ref.: #68375]	trehalose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	turanose ChEBI	+	fermentation	* from API ID32STA
[Ref.: #68375]	urea ChEBI	+	hydrolysis	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68375]		acetoin ChEBI	no	* from API ID32STA

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #68375]		acetoin ChEBI	-	* from API ID32STA

	Enzyme	Enzyme activity	EC number
[Ref.: #31449]	acid phosphatase	+	3.1.3.2
[Ref.: #31449]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68375]	alkaline phosphatase	+	3.1.3.1	* from API ID32STA
[Ref.: #68375]	arginine dihydrolase	+	3.5.3.6	* from API ID32STA
[Ref.: #68375]	beta-galactosidase	-	3.2.1.23	* from API ID32STA
[Ref.: #68375]	beta-glucosidase	-	3.2.1.21	* from API ID32STA
[Ref.: #68375]	beta-glucuronidase	-	3.2.1.31	* from API ID32STA
[Ref.: #7100]	catalase	+	1.11.1.6
[Ref.: #31449]	catalase	+	1.11.1.6
[Ref.: #7100]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68375]	L-arginine arylamidase	-		* from API ID32STA
[Ref.: #68375]	ornithine decarboxylase	-	4.1.1.17	* from API ID32STA
[Ref.: #68375]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API ID32STA
[Ref.: #31449]	urease	+	3.5.1.5
[Ref.: #68375]	urease	+	3.5.1.5	* from API ID32STA
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #59117]

Fatty acid	Percentage	ECL
C15:0 ANTEISO	53.5	14.711
C17:0 anteiso	24.9	16.722
C15:0 ISO	3.8	14.621
C17:0 iso	3.4	16.629
C19:0 ANTEISO	2.8	18.729
C18:2 ω6,9c/C18:0 ANTE	2.5	17.724
C18:0	2.4	18
C16:0 iso	1.7	15.626
C16:0	1.5	16
C18:1 ω9c	1.1	17.769
C14:0 ISO	0.8	13.618
C18:0 ISO	0.6	17.632
C20:0	0.5	20
C19:0 ISO	0.4	18.633

API® ID32STA:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	Ornithine decarboxylaseODC	Esculin hydrolysisESC	Fermentation of D-glucoseGLU	Fermentation of D-fructoseFRU	Fermentation of D-mannoseMNE	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of trehaloseTRE	Fermentation of D-mannitolMAN	Fermentation of raffinoseRAF	Fermentation of D-riboseRIB	Fermentation of cellobioseCEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta-Galactosidasebeta GAL	L-arginine arylamidaseArgA	Alkaline phosphatasePAL	Pyrrolidonyl arylamidasePyrA	Novobiocin resistanceNOVO	Fermentation of sucroseSAC	Fermentation of N-acetyl-glucosamineNAG	Fermentation of turanoseTUR	Fermentation of arabinoseARA	beta-Glucuronidasebeta GUR
[Ref.: #7100]	6148	+	+	-	-	+	+	-	+	+	+	+	-	-	-	+	-	-	-	+	-	-	+	+	+	-	-
[Ref.: #7100]	5891	+	+	-	-	+	+	-	+	+	+	+	-	-	-	+	-	-	-	+	-	+	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7100]	Sample type/isolated from	faeces, South American squirrel monkey
[Ref.: #7100]	Geographic location (country and/or sea, region)	Olomouc, Zoological Garden
[Ref.: #7100]	Country	Czech Republic
[Ref.: #7100]	Country ISO 3 Code	CZE
[Ref.: #7100]	Continent	Europe

[Ref.: #59117]	Sample type/isolated from	Monkey feces,South American squirrel
[Ref.: #59117]	Sampling date	2004
[Ref.: #59117]	Geographic location (country and/or sea, region)	Olomouc,Zoological Garden
[Ref.: #59117]	Country	Czech Republic
[Ref.: #59117]	Country ISO 3 Code	CZE
[Ref.: #59117]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY727530 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	991
Soil Samples	353
Animal Samples	21663
Plant Samples	192
Total Samples	23199

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7100]	Pathogenicity (animal)	yes
[Ref.: #7100]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7100]	Staphylococcus simiae strain CCM 7213 16S ribosomal RNA gene, partial sequence	AY727530	1478	ENA	911238 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Staphylococcus simiae CCUG 51256	GCA_002902085	scaffold	GenBank	308354 tax ID	*
[Ref.: #66792]	Staphylococcus simiae CCM 7213 = CCUG 51256	GCA_000235645	contig	GenBank	911238 tax ID	*
[Ref.: #66792]	Staphylococcus simiae CCM 7213	911238.3	wgs	PATRIC	911238 tax ID	*
[Ref.: #66792]	Staphylococcus simiae strain CCUG 51256	308354.6	wgs	PATRIC	308354 tax ID	*
[Ref.: #66792]	Staphylococcus simiae Olomouc 25, CCM 7213	2513237273	draft	JGI IMG/M	911238 tax ID	*

[Ref.: #7100]

GC-content

33.8 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Staphylococcus simiae CCM 7213 PATRIC: 911238.3
[Ref.: #69480]	motile	no	89.232	yes
[Ref.: #69480]	flagellated	no	92.438	yes
[Ref.: #69480]	gram-positive	yes	91.647	no
[Ref.: #69480]	anaerobic	no	99.539	no
[Ref.: #69480]	halophile	yes	95.784	yes
[Ref.: #69480]	spore-forming	no	92.032	no
[Ref.: #69480]	thermophile	no	99.579	yes
[Ref.: #69480]	glucose-util	yes	89.051	yes
[Ref.: #69480]	aerobic	yes	91.559	no
[Ref.: #69480]	glucose-ferment	yes	79.993	no

Availability in culture collections External links

[Ref.: #7100]

Culture collection no.

CCUG 51256, DSM 17636, CCM 7213, CIP 108931, LMG 22723

[Ref.: #83791]

SI-ID 132706

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Staphylococcus simiae sp. nov., isolated from South American squirrel monkeys.	Pantucek R, Sedlacek I, Petras P, Koukalova D, Svec P, Stetina V, Vancanneyt M, Chrastinova L, Vokurkova J, Ruzickova V, Doskar J, Swings J, Hajek V	Int J Syst Evol Microbiol	10.1099/ijs.0.63590-0	2005	*

References

#7100

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17636

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31449

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27752 (see below)

#59117 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51256

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68375

Automatically annotated from API ID32STA .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83791

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID132706.1 )

#27752

IJSEM 1953 2005 ( DOI 10.1099/ijs.0.63590-0 , PubMed 16166694 )

* These data were automatically processed and therefore are not curated

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Staphylococcus simiae CCM 7213

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