Cardiobacterium valvarum (CCUG 31208)

Name: Cardiobacterium valvarum (CCUG 31208)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 146461

Type strain

Culture col. no. CCUG 31208

NCBI tax ID(s) 194702

Special Collections CCUG

Links

Cardiobacterium valvarum CCUG 31208 is a prokaryote that was isolated from Human tooth plaque.

16S sequence

Name and taxonomic classification

SI-ID 52565

CCUG 31208

@ref 20215

Last LPSN update 2025-12-16 10:05:06

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cardiobacteriales

Family Cardiobacteriaceae

Genus Cardiobacterium

Species Cardiobacterium valvarum

Full scientific name Cardiobacterium valvarum Han et al. 2004

BacDive ID	Other strains from **Cardiobacterium valvarum** (6)	Type strain
2234	C. valvarum DSM 17211, ATCC BAA-694, CCUG 48245, CIP ... (type strain)
142560	C. valvarum CCUG 12990
142571	C. valvarum CCUG 13094
142585	C. valvarum CCUG 13150
154313	C. valvarum CCUG 53031
156937	C. valvarum CCUG 67169

Morphology

Culture and growth conditions

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68377	15824 ChEBI	D-fructose	+	builds acid from	from API NH
68377	17634 ChEBI	D-glucose	+	builds acid from	from API NH
68377	17306 ChEBI	maltose	+	builds acid from	from API NH
68377	18257 ChEBI	ornithine	-	degradation	from API NH
68377	17992 ChEBI	sucrose	+	builds acid from	from API NH
68377	27897 ChEBI	tryptophan	-	energy source	from API NH
68377	16199 ChEBI	urea	-	hydrolysis	from API NH

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68377	35581 ChEBI	indole		from API NH

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68377	35581 ChEBI	indole	-	from API NH

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68377	alkaline phosphatase	-	3.1.3.1	from API NH
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
68377	beta-galactosidase	-	3.2.1.23	from API NH
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68377	beta-lactamase	-	3.5.2.6	from API NH
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68377	gamma-glutamyltransferase	+	2.3.2.2	from API NH
68382	leucine arylamidase	+	3.4.11.1	from API zym
68377	lipase	+		from API NH
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68377	ornithine decarboxylase	-	4.1.1.17	from API NH
68377	proline-arylamidase	-	3.4.11.5	from API NH
68382	trypsin	+	3.4.21.4	from API zym
68377	tryptophan deaminase	-	4.1.99.1	from API NH
68377	urease	-	3.5.1.5	from API NH
68382	valine arylamidase	-		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	gluconeogenesis	100	8 of 8
66794	L-lactaldehyde degradation	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	coenzyme A metabolism	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	lipoate biosynthesis	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	pentose phosphate pathway	81.82	9 of 11
66794	peptidoglycan biosynthesis	80	12 of 15
66794	threonine metabolism	80	8 of 10
66794	glycogen metabolism	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	serine metabolism	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	phenylalanine metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	Entner Doudoroff pathway	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	aspartate and asparagine metabolism	66.67	6 of 9
66794	cyanate degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	polyamine pathway	65.22	15 of 23
66794	lipid metabolism	64.52	20 of 31
66794	proline metabolism	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	ketogluconate metabolism	62.5	5 of 8
66794	alanine metabolism	62.07	18 of 29
66794	purine metabolism	61.7	58 of 94
66794	glycolysis	58.82	10 of 17
66794	methionine metabolism	57.69	15 of 26
66794	propanol degradation	57.14	4 of 7
66794	glutathione metabolism	57.14	8 of 14
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	leucine metabolism	53.85	7 of 13
66794	oxidative phosphorylation	50.55	46 of 91
66794	ethanol fermentation	50	1 of 2
66794	heme metabolism	50	7 of 14
66794	adipate degradation	50	1 of 2
66794	glutamate and glutamine metabolism	50	14 of 28
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	butanoate fermentation	50	2 of 4
66794	sulfopterin metabolism	50	2 of 4
66794	pyrimidine metabolism	48.89	22 of 45
66794	lysine metabolism	47.62	20 of 42
66794	tryptophan metabolism	47.37	18 of 38
66794	CO2 fixation in Crenarchaeota	44.44	4 of 9
66794	allantoin degradation	44.44	4 of 9
66794	degradation of sugar acids	44	11 of 25
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	mevalonate metabolism	42.86	3 of 7
66794	degradation of aromatic, nitrogen containing compounds	41.67	5 of 12
66794	factor 420 biosynthesis	40	2 of 5
66794	methylglyoxal degradation	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	starch degradation	40	4 of 10
66794	D-cycloserine biosynthesis	40	2 of 5
66794	propionate fermentation	40	4 of 10
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	degradation of hexoses	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	metabolism of disaccharids	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	tyrosine metabolism	35.71	5 of 14
66794	degradation of pentoses	35.71	10 of 28
66794	isoprenoid biosynthesis	34.62	9 of 26
66794	IAA biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	myo-inositol biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	arginine metabolism	29.17	7 of 24
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	alginate biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	androgen and estrogen metabolism	25	4 of 16
66794	histidine metabolism	24.14	7 of 29
66794	sulfate reduction	23.08	3 of 13
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	nitrate assimilation	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18

Fatty acid profile

Metadata FA analysis

@ref

50475

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	37.3	17.824
C16:0	25	16
C14:0	15.1	14
C12:0	8.8	12
C14:0 3OH/C16:1 ISO I	5.2	15.485
C16:1 ω7c	4.3	15.819
C16:0 3OH	2.7	17.52
C18:2 ω6,9c/C18:0 ANTE	0.9	17.724
C18:0	0.7	18

Metadata FA analysis

@ref

50475

Fatty acid	Percentage	ECL
C18:1 ω7c /12t/9t	40.5	17.824
C16:0	30	16
C14:0	12.5	14
C12:0	6.5	12
C16:1 ω7c	3.5	15.819
C14:0 3OH/C16:1 ISO I	3.5	15.485
C16:0 3OH	2.3	17.52
C18:0	0.7	18
C13:1 at 12-13	0.3	12.931
Unidentified	0.2	10.915

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
50475	-	-	+	+	-	+	-	-	+	-	+	+	-	-	-	-	-	-	-	-

API NH

@ref	PEN	GLU	FRU	MAL	SAC	ODC	URE	LIP	PAL	beta GAL	ProA	GGT	IND
50475	-	+	+	+	+	-	-	+	-	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Plaque
#Infection	#Patient	-

Isolation

50475

Sample typeHuman tooth plaque

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Cardiobacterium valvarum strain CCUG31208 16S ribosomal RNA gene, partial sequence.	AY596468	1492		194702

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#50475	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 31208
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68377	Automatically annotated from API NH .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cardiobacterium valvarum (CCUG 31208)

Name and taxonomic classification

Morphology

Culture and growth conditions