Neisseria weaveri (CCUG 30799, ATCC 51223, CCM 4588)

Name: Neisseria weaveri (CCUG 30799, ATCC 51223, CCM 4588)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 146284

Type strain

Culture col. no. CCUG 30799 ATCC 51223 CCM 4588

NCBI tax ID(s) 1051972 28091

Special Collections CCUG

Links

Neisseria weaveri CCUG 30799 is a prokaryote that was isolated from Human wound,dog-bite.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 105417

ATCC 51223,CCUG 30799,CCM 4588

@ref 20215

Last LPSN update 2025-12-16 10:05:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Neisseriales

Family Neisseriaceae

Genus Neisseria

Species Neisseria weaveri

Full scientific name Neisseria weaveri Holmes et al. 1993

Synonyms (1)

Neisseria weaveri

BacDive ID	Other strains from **Neisseria weaveri** (56)	Type strain
10481	N. weaveri ISL775/91, DSM 17688, ATCC 51410, CCM 4587, ... (type strain)
135115	N. weaveri CNPM 11, CIP 103941, CCUG 4130 B
135338	N. weaveri CNPM 8, CIP 103942, CCUG 9689
135339	N. weaveri CNPM 6, CIP 103943, CCUG 9690
135340	N. weaveri CNPM 7, CIP 103944, CCUG 9693
138902	N. weaveri CNPM 9, CIP 103945, CCUG 22467
142003	N. weaveri CCUG 9688
142684	N. weaveri CCUG 13906
142687	N. weaveri CCUG 13910 B
143530	N. weaveri CCUG 19865
143596	N. weaveri CCUG 20520
144463	N. weaveri CCUG 25017
145409	N. weaveri CCUG 28384
145432	N. weaveri CCUG 28485
145448	N. weaveri CCUG 28573
145526	N. weaveri CCUG 28753
146101	N. weaveri CCUG 30381
146737	N. weaveri CCUG 32043
146831	N. weaveri CCUG 32194
147026	N. weaveri CCUG 32667
147082	N. weaveri CCUG 32819
147142	N. weaveri CCUG 32933
147302	N. weaveri CCUG 33337
147527	N. weaveri CCUG 33743
147534	N. weaveri CCUG 33757
147570	N. weaveri CCUG 33819
147714	N. weaveri CCUG 34064
147969	N. weaveri CCUG 34597
148006	N. weaveri CCUG 34658
148007	N. weaveri CCUG 34659
148008	N. weaveri CCUG 34660
148034	N. weaveri CCUG 34714
148174	N. weaveri CCUG 34972
148858	N. weaveri CCUG 36508
148894	N. weaveri CCUG 36560
149134	N. weaveri CCUG 36908
149141	N. weaveri CCUG 36923
149366	N. weaveri CCUG 37598
149885	N. weaveri CCUG 38612
150023	N. weaveri CCUG 38857
150255	N. weaveri CCUG 39397
150277	N. weaveri CCUG 39472
150313	N. weaveri CCUG 39614
151017	N. weaveri CCUG 43048
151121	N. weaveri CCUG 43321
151195	N. weaveri CCUG 43441
151355	N. weaveri CCUG 43831
151584	N. weaveri CCUG 44385
151788	N. weaveri CCUG 44880
154109	N. weaveri CCUG 52390
154262	N. weaveri CCUG 52919
154556	N. weaveri CCUG 54397
154641	N. weaveri CCUG 54715
155424	N. weaveri CCUG 57703
156747	N. weaveri CCUG 64766
174301	N. weaveri CIMB 04-6129, CRBIP17.113

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100

Culture and growth conditions

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		92.489
125439		99.3

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	ubiquinone biosynthesis	100	7 of 7
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	denitrification	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	folate polyglutamylation	100	1 of 1
66794	palmitate biosynthesis	95.45	21 of 22
66794	pentose phosphate pathway	90.91	10 of 11
66794	valine metabolism	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	threonine metabolism	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	methylglyoxal degradation	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	vitamin B1 metabolism	76.92	10 of 13
66794	CMP-KDO biosynthesis	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	gluconeogenesis	75	6 of 8
66794	lactate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	butanoate fermentation	75	3 of 4
66794	vitamin B6 metabolism	72.73	8 of 11
66794	propanol degradation	71.43	5 of 7
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	reductive acetyl coenzyme A pathway	71.43	5 of 7
66794	purine metabolism	70.21	66 of 94
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	heme metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	methionine metabolism	61.54	16 of 26
66794	Entner Doudoroff pathway	60	6 of 10
66794	propionate fermentation	60	6 of 10
66794	glycolysis	58.82	10 of 17
66794	non-pathway related	57.89	22 of 38
66794	pyrimidine metabolism	57.78	26 of 45
66794	tyrosine metabolism	57.14	8 of 14
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	arginine metabolism	54.17	13 of 24
66794	leucine metabolism	53.85	7 of 13
66794	histidine metabolism	51.72	15 of 29
66794	alanine metabolism	51.72	15 of 29
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	cyclohexanol degradation	50	2 of 4
66794	ethanol fermentation	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	acetate fermentation	50	2 of 4
66794	glycogen biosynthesis	50	2 of 4
66794	glutathione metabolism	50	7 of 14
66794	glycine metabolism	50	5 of 10
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	adipate degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	degradation of sugar alcohols	50	8 of 16
66794	ribulose monophosphate pathway	50	1 of 2
66794	cysteine metabolism	50	9 of 18
66794	oxidative phosphorylation	48.35	44 of 91
66794	lysine metabolism	47.62	20 of 42
66794	tryptophan metabolism	47.37	18 of 38
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	urea cycle	46.15	6 of 13
66794	lipid metabolism	45.16	14 of 31
66794	factor 420 biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	glycogen metabolism	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	cyanate degradation	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	molybdenum cofactor biosynthesis	33.33	3 of 9
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	octane oxidation	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sulfate reduction	30.77	4 of 13
66794	polyamine pathway	30.43	7 of 23
66794	coenzyme M biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	metabolism of disaccharids	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	degradation of pentoses	25	7 of 28
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	phenylpropanoid biosynthesis	23.08	3 of 13
66794	carotenoid biosynthesis	22.73	5 of 22
66794	degradation of hexoses	22.22	4 of 18
66794	nitrate assimilation	22.22	2 of 9
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Other	#Wound
#Infection	#Patient	-

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
50279	Human wound,dog-bite	1962	New York,Bellevue Hosp.	USA	USA	North America

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM22427v2 assembly for Neisseria weaveri ATCC 51223	contig	GCA_000224275	1051972.3	2563366766	1051972	70.31

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Neisseria weaveri 16S rRNA gene, partial	AJ247250	457		28091

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Neisseria weaveri ATCC 51223
NCBI: GCA_000224275

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	85.90	no
125439	gram_stain	BacteriaNetⓘ	negative	83.20	no
125439	motility	BacteriaNetⓘ	no	77.50	no
125439	spore_formation	BacteriaNetⓘ	no	99.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Neisseria weaveri ATCC 51223
PATRIC: 1051972.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	92.87	no
125438	spore-forming	spore-formingⓘ	no	92.49	no
125438	aerobic	aerobicⓘ	yes	62.33	no
125438	thermophilic	thermophileⓘ	no	97.48	no
125438	flagellated	motile2+ⓘ	no	85.01	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Complete Genome Sequence of Neisseria weaveri Strain NCTC13585.	Alexander S, Fazal MA, Burnett E, Deheer-Graham A, Oliver K, Holroyd N, Parkhill J, Russell JE.	Genome Announc	10.1128/genomea.00815-16	2016
Phylogeny	Confirmation of the Need for Reclassification of Neisseria mucosa and Neisseria sicca Using Average Nucleotide Identity Blast and Phylogenetic Analysis of Whole-Genome Sequencing: Hinted by Clinical Misclassification of a Neisseria mucosa Strain.	Jin Y, Xu H, Yao Q, Gu B, Wang Z, Wang T, Yu X, Lu Y, Zheng B, Zhang Y.	Front Microbiol	10.3389/fmicb.2021.780183	2021
Enzymology	Neisseria weaveri sp. nov., formerly CDC group M-5, a gram-negative bacterium associated with dog bite wounds.	Andersen BM, Steigerwalt AG, O'Connor SP, Hollis DG, Weyant RS, Weaver RE, Brenner DJ.	J Clin Microbiol	10.1128/jcm.31.9.2456-2466.1993	1993

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#50279	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30799
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Neisseria weaveri (CCUG 30799, ATCC 51223, CCM 4588)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Spore formation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000224275

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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