Strain identifier
BacDive ID: 146284
Type strain:
Species: Neisseria weaveri
NCBI tax ID(s): 1051972 (strain), 28091 (species)
version 8.1 (current version)
General
@ref: 50279
BacDive-ID: 146284
keywords: genome sequence, Bacteria, Gram-negative
description: Neisseria weaveri CCUG 30799 is a Gram-negative bacterium that was isolated from Human wound,dog-bite.
NCBI tax id
NCBI tax id | Matching level |
---|---|
28091 | species |
1051972 | strain |
doi: 10.13145/bacdive146284.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Neisseriales
- family: Neisseriaceae
- genus: Neisseria
- species: Neisseria weaveri
- full scientific name: Neisseria weaveri Holmes et al. 1993
synonyms
- @ref: 20215
- synonym: Neisseria weaveri
@ref: 50279
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Neisseriales
family: Neisseriaceae
genus: Neisseria
species: Neisseria weaveri
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.992
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69480 | no | 99.998 |
69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 50279
- sample type: Human wound,dog-bite
- sampling date: 1962
- geographic location: New York,Bellevue Hosp.
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host | #Mammals | #Canidae (Dog) |
#Host Body-Site | #Other | #Wound |
#Infection | #Patient |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Neisseria weaveri ATCC 51223 | GCA_000224275 | contig | ncbi | 1051972 |
66792 | Neisseria weaveri ATCC 51223 | 1051972.3 | wgs | patric | 1051972 |
66792 | Neisseria weaveri ATCC 51223 | 2563366766 | draft | img | 1051972 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 86.005 | no |
flagellated | no | 93.452 | no |
gram-positive | no | 98.968 | no |
anaerobic | no | 97.01 | no |
aerobic | no | 89.035 | no |
halophile | no | 68.058 | no |
spore-forming | no | 96.888 | no |
thermophile | no | 99.076 | no |
glucose-util | yes | 51.661 | no |
glucose-ferment | no | 92.045 | no |
External links
@ref: 50279
culture collection no.: CCUG 30799, ATCC 51223, CCM 4588
straininfo link
- @ref: 101184
- straininfo: 105417
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
50279 | Curators of the CCUG | https://www.ccug.se/strain?id=30799 | Culture Collection University of Gothenburg (CCUG) (CCUG 30799) | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
101184 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID105417.1 |