Staphylococcus lutrae M340/94 is an aerobe, mesophilic, Gram-positive animal pathogen that was isolated from mammary gland of otter .
Gram-positive coccus-shaped aerobe mesophilic animal pathogen genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Caryophanales |
| Family Staphylococcaceae |
| Genus Staphylococcus |
| Species Staphylococcus lutrae |
| Full scientific name Staphylococcus lutrae Foster et al. 1997 |
| BacDive ID | Other strains from Staphylococcus lutrae (5) | Type strain |
|---|---|---|
| 14615 | S. lutrae M919/93/11, DSM 10245 | |
| 14616 | S. lutrae M2149/94/2, DSM 10246 | |
| 154049 | S. lutrae CCUG 52134 | |
| 154050 | S. lutrae CCUG 52135 | |
| 154051 | S. lutrae CCUG 52136 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3864 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 3864 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 32697 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 120713 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68375 | 22599 ChEBI | arabinose | - | fermentation | from API ID32STA |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68375 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32STA |
| 68375 | 17057 ChEBI | cellobiose | - | fermentation | from API ID32STA |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68375 | 15824 ChEBI | D-fructose | + | fermentation | from API ID32STA |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68375 | 17634 ChEBI | D-glucose | + | fermentation | from API ID32STA |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68375 | 16899 ChEBI | D-mannitol | + | fermentation | from API ID32STA |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68375 | 16024 ChEBI | D-mannose | + | fermentation | from API ID32STA |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68375 | 16988 ChEBI | D-ribose | - | fermentation | from API ID32STA |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68375 | 4853 ChEBI | esculin | - | hydrolysis | from API ID32STA |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 120713 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68375 | 17716 ChEBI | lactose | + | fermentation | from API ID32STA |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68375 | 17306 ChEBI | maltose | - | fermentation | from API ID32STA |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68375 | 59640 ChEBI | N-acetylglucosamine | + | fermentation | from API ID32STA |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 68375 | 17632 ChEBI | nitrate | + | reduction | from API ID32STA |
| 120713 | 17632 ChEBI | nitrate | + | reduction | |
| 120713 | 16301 ChEBI | nitrite | - | reduction | |
| 68375 | 18257 ChEBI | ornithine | - | degradation | from API ID32STA |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68375 | 16634 ChEBI | raffinose | - | fermentation | from API ID32STA |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68375 | 17992 ChEBI | sucrose | - | fermentation | from API ID32STA |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68375 | 27082 ChEBI | trehalose | + | fermentation | from API ID32STA |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68375 | 32528 ChEBI | turanose | - | fermentation | from API ID32STA |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68375 | 16199 ChEBI | urea | + | hydrolysis | from API ID32STA |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | ChEBI | Metabolite | Is antibiotic | Is sensitive | Sensitivity conc. | |
|---|---|---|---|---|---|---|
| 68375 | 28368 | novobiocin | 1.8 µg | from API ID32STA |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 120713 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68375 | alkaline phosphatase | + | 3.1.3.1 | from API ID32STA |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | + | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120713 | amylase | - | ||
| 68375 | arginine dihydrolase | - | 3.5.3.6 | from API ID32STA |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 120713 | beta-galactosidase | + | 3.2.1.23 | |
| 68375 | beta-galactosidase | + | 3.2.1.23 | from API ID32STA |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68375 | beta-glucosidase | - | 3.2.1.21 | from API ID32STA |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68375 | beta-glucuronidase | - | 3.2.1.31 | from API ID32STA |
| 120713 | caseinase | + | 3.4.21.50 | |
| 3864 | catalase | + | 1.11.1.6 | |
| 120713 | catalase | + | 1.11.1.6 | |
| 120713 | coagulase | + | ||
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 3864 | cytochrome-c oxidase | - | 1.9.3.1 | |
| 120713 | DNase | + | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120713 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 120713 | gelatinase | +/- | ||
| 68375 | L-arginine arylamidase | - | from API ID32STA | |
| 120713 | lecithinase | + | ||
| 68382 | leucine arylamidase | - | 3.4.11.1 | from API zym |
| 120713 | lipase | + | ||
| 68382 | lipase (C 14) | + | from API zym | |
| 120713 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120713 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68375 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32STA |
| 120713 | oxidase | - | ||
| 120713 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 120713 | tween esterase | - | ||
| 120713 | urease | + | 3.5.1.5 | |
| 68375 | urease | + | 3.5.1.5 | from API ID32STA |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120713 | not determinedn.d. | + | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | + | - | - | - | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - |
| @ref | URE | ADH (Arg) | ODC | ESC | GLU | FRU | MNE | MAL | LAC | TRE | MAN | RAF | RIB | CEL | Reduction of nitrateNIT | Acetoin production (Voges Proskauer test)VP | beta GAL | L-arginine arylamidaseArgA | PAL | Pyrrolidonyl arylamidasePyrA | NOVO | SAC | NAG | TUR | ARA | beta GUR | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3864 | + | - | - | - | + | + | + | - | + | + | + | - | - | - | + | - | + | - | + | +/- | - | - | + | - | - | - | |
| 3864 | + | - | - | - | + | + | + | - | + | + | + | - | - | - | + | - | + | - | + | + | - | - | + | - | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Mammals | #Canidae (Dog) | |
| #Host Body-Site | #Organ | #Mammary gland |
| @ref | Sample type | Host species | Geographic location | Country | Country ISO 3 Code | Continent | Sampling date | Isolation date | |
|---|---|---|---|---|---|---|---|---|---|
| 3864 | mammary gland of otter (Lutra lutra) | Lutra lutra | Scotland, Isle of Skye | United Kingdom | GBR | Europe | |||
| 54290 | Otter,mammary gland and supramammary lymph node | Isle of Skye | United Kingdom | GBR | Europe | 1994 | |||
| 120713 | Otter, Lutra lutra, mammary gland | Isle of Skye, Scotland | United Kingdom | GBR | Europe | 1994 |
Global distribution of 16S sequence X84731 (>99% sequence identity) for Staphylococcus from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM210133v1 assembly for Staphylococcus lutrae ATCC 700373 | complete | 155085 | 94.99 | ||||
| 66792 | ASM290216v1 assembly for Staphylococcus lutrae DSM 10244 | scaffold | 155085 | 27.01 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Staphylococcus lutrae strain DSM 10244 16S ribosomal RNA gene, partial sequence | AY688077 | 464 | 155085 | ||
| 3864 | Staphylococcus sp. gene for 16S ribosomal RNA | X84731 | 1511 | 29387 | ||
| 124043 | Staphylococcus lutrae strain DSM 10244 16S ribosomal RNA gene, partial sequence. | MF678946 | 1283 | 155085 | ||
| 124043 | Staphylococcus lutrae strain DSM 10244 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence. | MF678890 | 4267 | 155085 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | yes | 58.30 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 58.70 | no |
| 125439 | gram_stain | BacteriaNetⓘ | variable | 71.00 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 86.78 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.96 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 51.37 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 73.73 | no |
| 125438 | thermophilic | thermophileⓘ | no | 95.29 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 84.53 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Characterisation of anhydro-sialic acid transporters from mucosa-associated bacteria. | Wu Y, Bell A, Thomas GH, Bolam DN, Sargent F, Juge N, Palmer T, Severi E. | Microbiology (Reading) | 10.1099/mic.0.001448 | 2024 | ||
| Draft Genome Sequences of 64 Type Strains of 50 Species and 25 Subspecies of the Genus Staphylococcus Rosenbach 1884. | Cole K, Foster D, Russell JE, Golubchik T, Llewelyn M, Wilson DJ, Crook D, Paul J, Modernising Medical Microbiology Consortium. | Microbiol Resour Announc | 10.1128/mra.00062-19 | 2019 | ||
| Phylogeny | Rapid and accurate species-level identification of coagulase-negative staphylococci by using the sodA gene as a target. | Poyart C, Quesne G, Boumaila C, Trieu-Cuot P. | J Clin Microbiol | 10.1128/jcm.39.12.4296-4301.2001 | 2001 | |
| Complete Genome Sequence of Staphylococcus lutrae ATCC 700373, a Potential Pathogen Isolated from Deceased Otters. | Veseli IA, Tang C, Pombert JF. | Genome Announc | 10.1128/genomea.00572-17 | 2017 | ||
| Metabolism | Staphylococcus aureus Genomes Harbor Only MpsAB-Like Bicarbonate Transporter but Not Carbonic Anhydrase as Dissolved Inorganic Carbon Supply System. | Fan SH, Liberini E, Gotz F. | Microbiol Spectr | 10.1128/spectrum.00970-21 | 2021 | |
| Metabolism | The MpsAB Bicarbonate Transporter Is Superior to Carbonic Anhydrase in Biofilm-Forming Bacteria with Limited CO2 Diffusion. | Fan SH, Matsuo M, Huang L, Tribelli PM, Gotz F. | Microbiol Spectr | 10.1128/spectrum.00305-21 | 2021 | |
| Phylogeny | Staphylococcus lutrae sp. nov., a new coagulase-positive species isolated from otters. | Foster G, Ross HM, Hutson RA, Collins MD | Int J Syst Bacteriol | 10.1099/00207713-47-3-724 | 1997 |
| #3864 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10244 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #32697 | ; Curators of the CIP; |
| #54290 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 38494 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68375 | Automatically annotated from API ID32STA . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #120713 | Collection of Institut Pasteur ; Curators of the CIP; CIP 105399 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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https://doi.org/10.13145/bacdive14614.20251217.10
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BacDive in 2025: the core database for prokaryotic strain data