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Strain identifier

BacDive ID: 14614

Type strain: Yes

Species: Staphylococcus lutrae

Strain Designation: M340/94

Strain history: 1998, G. Foster, Vet. Serv., Inverness, UK: strain M340/94

NCBI tax ID(s): 155085 (species)

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General

@ref: 3864

BacDive-ID: 14614

DSM-Number: 10244

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, animal pathogen

description: Staphylococcus lutrae M340/94 is an aerobe, mesophilic animal pathogen that was isolated from mammary gland of otter .

NCBI tax id

  • NCBI tax id: 155085
  • Matching level: species

strain history

doi: 10.13145/bacdive14614.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus lutrae
  • full scientific name: Staphylococcus lutrae Foster et al. 1997

@ref: 3864

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus lutrae

full scientific name: Staphylococcus lutrae Foster et al. 1997

strain designation: M340/94

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 98.165

colony morphology

  • @ref: 3864
  • type of hemolysis: beta
  • incubation period: 1-2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3864COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
3864TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
32697MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
3864positivegrowth37mesophilic
32697positivegrowth37mesophilic
54290positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 54290
  • oxygen tolerance: aerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.857

halophily

  • @ref: 69480
  • halophily level: halophilic
  • confidence: 98.794

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837522599arabinose-fermentation
6837532528turanose-fermentation
6837559640N-acetylglucosamine+fermentation
6837517992sucrose-fermentation
6837517632nitrate+reduction
6837517057cellobiose-fermentation
6837516988D-ribose-fermentation
6837516634raffinose-fermentation
6837516899D-mannitol+fermentation
6837527082trehalose+fermentation
6837517716lactose+fermentation
6837517306maltose-fermentation
6837516024D-mannose+fermentation
6837515824D-fructose+fermentation
6837517634D-glucose+fermentation
683754853esculin-hydrolysis
6837518257ornithine-degradation
6837529016arginine-hydrolysis
6837516199urea+hydrolysis

antibiotic resistance

  • @ref: 68375
  • ChEBI: 28368
  • metabolite: novobiocin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 1.8 µg

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
3864catalase+1.11.1.6
3864cytochrome-c oxidase-1.9.3.1
68375beta-glucuronidase-3.2.1.31
68375alkaline phosphatase+3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase+3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase-3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
3864+---+++-+++---+-+-++/---+---
3864+---+++-+++---+-+-++--+---

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentsampling date
3864mammary gland of otter (Lutra lutra)Lutra lutraScotland, Isle of SkyeUnited KingdomGBREurope
54290Otter,mammary gland and supramammary lymph nodeIsle of SkyeUnited KingdomGBREurope1994

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Canidae (Dog)
#Host Body-Site#Organ#Mammary gland

taxonmaps

  • @ref: 69479
  • File name: preview.99_1134.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_888;99_1134&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: X84731
  • Sequence Identity:
  • Total samples: 413
  • soil counts: 3
  • aquatic counts: 5
  • animal counts: 399
  • plant counts: 6

Safety information

risk assessment

  • @ref: 3864
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Staphylococcus lutrae strain DSM 10244 16S ribosomal RNA gene, partial sequenceAY688077464ena155085
3864Staphylococcus sp. gene for 16S ribosomal RNAX847311511ena29387

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus lutrae DSM 10244GCA_002902165scaffoldncbi155085
66792Staphylococcus lutrae strain DSM 10244155085.7wgspatric155085
66792Staphylococcus lutrae DSM 102442917434650draftimg155085

External links

@ref: 3864

culture collection no.: DSM 10244, CCUG 38494

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/117887

literature

  • topic: Phylogeny
  • Pubmed-ID: 9226903
  • title: Staphylococcus lutrae sp. nov., a new coagulase-positive species isolated from otters.
  • authors: Foster G, Ross HM, Hutson RA, Collins MD
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-47-3-724
  • year: 1997
  • mesh: Animals, Coagulase/*metabolism, DNA, Bacterial/analysis, Molecular Sequence Data, Otters/*microbiology, Phylogeny, RNA, Ribosomal, 16S/analysis, Scotland, Staphylococcal Infections/microbiology/*veterinary, Staphylococcus/*classification/enzymology/genetics
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3864Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10244)https://www.dsmz.de/collection/catalogue/details/culture/DSM-10244
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32697Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17414
54290Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 38494)https://www.ccug.se/strain?id=38494
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)