Staphylococcus coagulans (DSM 6628, ATCC 49545, CIP 104370)

Name: Staphylococcus coagulans (DSM 6628, ATCC 49545, CIP 104370)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 14601

Type strain

Strain Designation GA211, GA 211

Culture col. no. DSM 6628 ATCC 49545 CIP 104370 JCM 7470 CCUG 37248 6 more

NCBI tax ID(s) 74706

Special Collections DSMZ CCUG JCM CIP

History <- JCM <- S. Igimi, GA211 S. Igimi GA 211. CIP <- 1995, DSM <- JCM <- S. Igimi: strain GA 211

Links

Staphylococcus coagulans GA211 is an aerobe, Gram-positive, coccus-shaped human pathogen that was isolated from external auditory meatus of dog with external ear otitis.

Gram-positive coccus-shaped aerobe human pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 45226

ATCC 49545,JCM 7470,CCUG 37248,CCM 4313,CIP 104370,DSM 6628,LMG 22205

@ref 20215

Last LPSN update 2026-02-09 11:21:27

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus coagulans

Full scientific name Staphylococcus coagulans (Igimi et al. 1990) Madhaiyan et al. 2020

Synonyms (1)

Staphylococcus schleiferi subsp. coagulans

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
122510	positive	coccus-shaped

Colony morphology

122510

Hemolysis ability1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
2634	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41140	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
122510	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
2634	positive	growth	37
41140	positive	growth	37
53553	positive	growth	37
67770	positive	growth	37
122510	positive	growth	15-45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
53553	aerobe
122510	facultative anaerobe
125439	obligate aerobe	98.6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68375	29016 ChEBI	arginine	+	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68375	15824 ChEBI	D-fructose	+	fermentation	from API ID32STA
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68375	16899 ChEBI	D-mannitol	-	fermentation	from API ID32STA
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68375	16024 ChEBI	D-mannose	+	fermentation	from API ID32STA
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68375	16988 ChEBI	D-ribose	+	fermentation	from API ID32STA
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68375	17716 ChEBI	lactose	-	fermentation	from API ID32STA
68375	17306 ChEBI	maltose	-	fermentation	from API ID32STA
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68375	17632 ChEBI	nitrate	+	reduction	from API ID32STA
122510	17632 ChEBI	nitrate	+	reduction
122510	16301 ChEBI	nitrite	-	reduction
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68375	17992 ChEBI	sucrose	-	fermentation	from API ID32STA
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68375	27082 ChEBI	trehalose	-	fermentation	from API ID32STA
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68375	16199 ChEBI	urea	+	hydrolysis	from API ID32STA
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68375	15688 ChEBI	acetoin		from API ID32STA
122510	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68375	15688 ChEBI	acetoin	+	from API ID32STA
122510	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
122510	alcohol dehydrogenase	+	1.1.1.1
68375	arginine dihydrolase	+	3.5.3.6	from API ID32STA
122510	beta-galactosidase	+	3.2.1.23
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
122510	catalase	+	1.11.1.6
122510	coagulase	+
122510	DNase	+
122510	gelatinase	+/-
68375	L-arginine arylamidase	-		from API ID32STA
122510	lecithinase	+
122510	lysine decarboxylase	-	4.1.1.18
122510	ornithine decarboxylase	-	4.1.1.17
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
122510	oxidase	-
122510	urease	+	3.5.1.5
68375	urease	+	3.5.1.5	from API ID32STA

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
122510	not determinedn.d.	+	-	-	-	+	-	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
2634	+	+	-	-	+	+	+	-	-	-	-	-	+	-	+	+	+	-	+	+	+	-	+	-	-	-
2634	+	+	-	-	+	+	+	-	-	-	-	-	+	-	+	+	-	-	-	+/-	-	-	+	-	-	-
2634	+	+	-	-	+	+	+	-	-	-	-	-	+	-	+	+	+	-	+	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	-
#Host	#Mammals	#Canidae (Dog)
#Host Body-Site	#Organ	#Ear

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
2634	external auditory meatus of dog with external ear otitis
53553	Canine external ear otitis	Tokyo ?	Japan	JPN	Asia
67770	Canine external ear otitis
122510	Animal, Dog, external ear otitis

Taxonmaps

69479

Global distribution of 16S sequence AB009945 (>99% sequence identity) for Staphylococcus from Microbeatlas

Aquatic Samples	5
Soil Samples	3
Animal Samples	399
Plant Samples	6
Total Samples	413

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
2634			2	Risk group (German classification) According to TRBA 466
122510			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM290199v1 assembly for Staphylococcus coagulans DSM 6628	scaffold	GCA_002901995	74706.5	2917424509	74706	43.3

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Staphylococcus schleiferi subsp. coagulans rrn gene for 16S ribosomal RNA	AB009945	1492	74706
20218	Staphylococcus schleiferi subsp. coagulans strain DSM 6628 16S ribosomal RNA gene, partial sequence	AY688091	464	74706
20218	Staphylococcus schleiferi subsp. coagulans gene for 16S rRNA, partial sequence, strain: GTC 510	AB233334	1338	74706

GC content

@ref	GC-content (mol%)	Method
2634	35.0	thermal denaturation, midpoint method (Tm)
67770	35.8	genome sequence analysis
67770	35	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus coagulans DSM 6628
NCBI: GCA_002901995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	77.30	no
125439	motility	BacteriaNetⓘ	yes	50.30	no
125439	gram_stain	BacteriaNetⓘ	positive	73.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus schleiferi subsp. coagulans strain DSM 6628
PATRIC: 74706.5

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.20	no
125438	anaerobic	anaerobicⓘ	no	98.29	yes
125438	aerobic	aerobicⓘ	yes	52.46	no
125438	spore-forming	spore-formingⓘ	no	73.71	no
125438	thermophilic	thermophileⓘ	no	94.00	no
125438	flagellated	motile2+ⓘ	no	84.53	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Molecular Epidemiological Characteristics of Staphylococcus pseudintermedius, Staphylococcus coagulans, and Coagulase-Negative Staphylococci Cultured from Clinical Canine Skin and Ear Samples in Queensland.	Horsman S, Zaugg J, Meler E, Mikkelsen D, Soares Magalhaes RJ, Gibson JS.	Antibiotics (Basel)	10.3390/antibiotics14010080	2025
	Diversity of Neurotransmitter-Producing Human Skin Commensals.	Rahmdel S, Purkayastha M, Nega M, Liberini E, Li N, Luqman A, Bruggemann H, Gotz F.	Int J Mol Sci	10.3390/ijms252212345	2024
	Distinguishing characteristics of Staphylococcus schleiferi and Staphylococcus coagulans of human and canine origin.	Sewid AH, Kania SA.	PLoS One	10.1371/journal.pone.0296850	2024
	Erythritol alters phosphotransferase gene expression and inhibits the in vitro growth of Staphylococcus coagulans isolated from canines with pyoderma.	Onishi-Sakamoto S, Fujii T, Watanabe K, Makida R, Iyori K, Toyoda Y, Tochio T, Nishifuji K.	Front Vet Sci	10.3389/fvets.2023.1272595	2023

References

#2634	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6628
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#41140	; Curators of the CIP;
#53553	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 37248
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68375	Automatically annotated from API ID32STA .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122510	Collection of Institut Pasteur ; Curators of the CIP; CIP 104370
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Staphylococcus coagulans (DSM 6628, ATCC 49545, CIP 104370)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 50CHac

API ID32STA

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002901995

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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