Empedobacter brevis (CCUG 28266)

Name: Empedobacter brevis (CCUG 28266)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 145353

Type strain

Culture col. no. CCUG 28266

NCBI tax ID(s) 247

Special Collections CCUG

Links

Empedobacter brevis CCUG 28266 is a bacterium that was isolated from Human blood.

Bacteria

Name and taxonomic classification

SI-ID 7261

LMG 12858,CCUG 28266

@ref 20215

Last LPSN update 2026-02-09 11:35:04

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Empedobacter

Species Empedobacter brevis

Full scientific name Empedobacter brevis (Holmes and Owen 1982 ex Lustig 1890) Vandamme et al. 1994

Synonyms (2)

"Flavobacterium brevis"
Flavobacterium breve

BacDive ID	Other strains from **Empedobacter brevis** (30)	Type strain
138772	E. brevis CL 88-76, CIP 103104, ATCC 43319, CCM 3299, ... (type strain)
134412	E. brevis CIP 103060
135104	E. brevis B68189, 14-74, CIP 78.46
135183	E. brevis CIP 103067
135866	E. brevis CIP 103061
135982	E. brevis CIP 102965
136020	E. brevis 539-85, CIP 101742
136166	E. brevis CIP 103077
136167	E. brevis CIP 103083
137225	E. brevis CIP 103046
137227	E. brevis CIP 103081
137588	E. brevis 24-74, 90 809, CIP 79.25, NCTC 11307
137597	E. brevis 25-79, CIP 79.41, NCTC 11380
137979	E. brevis CIP 102377
138770	E. brevis CIP 103076
139061	E. brevis 68-78, 8 A, CIP 78.68, NCTC 11308
139489	E. brevis CIP 111032
139517	E. brevis CIP 111072, CIP 200682
142681	E. brevis CCUG 13901, NCTC 11163
142743	E. brevis CCUG 14337 A
142744	E. brevis CCUG 14338
142789	E. brevis CCUG 14815
143498	E. brevis CCUG 19540 B
143857	E. brevis CCUG 21606
143971	E. brevis CCUG 22174
144647	E. brevis CCUG 26050
165416	E. brevis JCM 6810
165417	E. brevis JCM 6811
171316	E. brevis R528, CIP 109971
171317	E. brevis R563, Legall, CIP 109974

Morphology

Culture and growth conditions

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	+	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68382	beta-galactosidase	-	3.2.1.23	from API zym
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68382	cystine arylamidase	+	3.4.11.3	from API zym
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
68369	gelatinase	-		from API 20NE
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68382	trypsin	-	3.4.21.4	from API zym
68369	urease	+	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

49168

Fatty acid	Percentage	ECL
C15:0 ISO	17.8	14.621
C16:1 ω7c	16.5	15.819
C17:0 iso 3OH	12.8	18.161
C16:1 ω5c	10.8	15.908
C16:0	9.5	16
unknown 13.566	7.7	13.566
C17:1 ISO I/C16:0 DMA	5.4	16.481
C15:0 ISO 3OH	5.3	16.135
C16:0 3OH	3.7	17.52
Unidentified	2.1
Unidentified	1.6
C18:2 ω6,9c/C18:0 ANTE	1.6	17.724
C14:0 3OH/C16:1 ISO I	1.4	15.485
C14:0	1.3	14
C17:1 ω9c ISO	1.2	16.416
C17:0 iso	1.2	16.629

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
49168	-	+	-	+	-	+	+	+	-	-	+	+	-	-	-	+	-	-	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
49168	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Blood

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
49168	Human blood	1991-04-05	Göteborg	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#49168	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 28266
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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