Name: Salinicoccus luteus DSM 17002
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14431

Type strain:

Species: Salinicoccus luteus

Culture col. no.: DSM 17002, CGMCC 1.6511, JCM 19028, KCTC 3941, YIM 70202, CIP 109745

Strain history: <- WJ Li, Yunnan Int. Microbiol., China

NCBI tax ID(s): 1123233 (strain), 367840 (species)

SI-ID 398034

DSM 17002

Section

Salinicoccus luteus DSM 17002 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from desert soil sample.

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus luteus**
	Full Scientific Name (LPSN)	Salinicoccus luteus Zhang et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #32102]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #32102]	Cell length	0.9 µm

[Ref.: #32102]	Cell width	0.9 µm

[Ref.: #32102]	Cell shape	coccus-shaped
[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #32102]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #32102]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6683]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6683]

Culture medium growth

[Ref.: #6683]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6683]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6683]	growth	28 °C
[Ref.: #32102]	growth	04-45 °C
[Ref.: #32102]	optimum	30 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #6683]	Temperature range	mesophilic
[Ref.: #32102]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32102]			optimum	8.5
[Ref.: #32102]			growth	7.0-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32102]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #32102]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.628

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32102]		NaCl		growth	01-25	%
[Ref.: #32102]		NaCl		optimum	10	%

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32102]	arabinose ChEBI	+	carbon source
[Ref.: #32102]	cellobiose ChEBI	+	carbon source
[Ref.: #32102]	dextrin ChEBI	+	carbon source
[Ref.: #32102]	esculin ChEBI	+	hydrolysis
[Ref.: #32102]	fructose ChEBI	+	carbon source
[Ref.: #32102]	galactose ChEBI	+	carbon source
[Ref.: #32102]	glucose ChEBI	+	carbon source
[Ref.: #32102]	L-arabitol ChEBI	+	carbon source
[Ref.: #32102]	malonate ChEBI	+	carbon source
[Ref.: #32102]	maltose ChEBI	+	carbon source
[Ref.: #32102]	mannitol ChEBI	+	carbon source
[Ref.: #32102]	mannose ChEBI	+	carbon source
[Ref.: #32102]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #32102]	nitrate ChEBI	+	reduction
[Ref.: #32102]	ribitol ChEBI	+	carbon source
[Ref.: #32102]	salicin ChEBI	+	carbon source
[Ref.: #32102]	sorbitol ChEBI	+	carbon source
[Ref.: #32102]	sucrose ChEBI	+	carbon source
[Ref.: #32102]	tween 20 ChEBI	+	carbon source
[Ref.: #32102]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #32102]		catalase	+	1.11.1.6
[Ref.: #32102]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6683]	Sample type/isolated from	desert soil sample
[Ref.: #6683]	Geographic location (country and/or sea, region)	Wadi Sannur
[Ref.: #6683]	Country	Egypt
[Ref.: #6683]	Country ISO 3 Code	EGY
[Ref.: #6683]	Continent	Africa

[Ref.: #67771]	Sample type/isolated from	From desert soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Wadi Sannur
[Ref.: #67771]	Country	Egypt
[Ref.: #67771]	Country ISO 3 Code	EGY
[Ref.: #67771]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6683]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6683]	Salinicoccus luteus strain YIM 70202 16S ribosomal RNA gene, partial sequence	DQ352839	1507	ENA	367840 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Salinicoccus luteus DSM 17002	GCA_000712035	scaffold	GenBank	1123233 tax ID	*
[Ref.: #66792]	Salinicoccus luteus DSM 17002	1123233.3	wgs	PATRIC	1123233 tax ID	*
[Ref.: #66792]	Salinicoccus luteus DSM 17002	2565956509	draft	JGI IMG/M	1123233 tax ID	*

[Ref.: #6683]	GC-content	49.7 mol%
[Ref.: #67771]	GC-content	49.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Salinicoccus luteus DSM 17002 DSM 17002 NCBI: GCA_000712035.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Salinicoccus luteus DSM 17002 DSM 17002 NCBI: GCA_000712035.1
[Ref.: #69480]	motile	no	88.455	no
[Ref.: #69480]	flagellated	no	91.48	yes
[Ref.: #69480]	gram-positive	yes	94.82	yes
[Ref.: #69480]	anaerobic	no	98.958	yes
[Ref.: #69480]	halophile	yes	94.457	yes
[Ref.: #69480]	spore-forming	no	88.121	no
[Ref.: #69480]	thermophile	no	99.262	yes
[Ref.: #69480]	glucose-util	yes	88.167	yes
[Ref.: #69480]	aerobic	yes	95.637	no
[Ref.: #69480]	glucose-ferment	no	57.547	no

Availability in culture collections External links

[Ref.: #6683]

Culture collection no.

DSM 17002, CGMCC 1.6511, JCM 19028, KCTC 3941, YIM 70202, CIP 109745

[Ref.: #83575]

SI-ID 398034

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicoccus amylolyticus sp. nov., isolated from a saltern.	Srinivas A, Divyasree B, Tushar L, Suresh G, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijsem.0.001270	2016	*
Phylogeny	Salinicoccus luteus sp. nov., isolated from a desert soil.	Zhang YQ, Yu LY, Liu HY, Zhang YQ, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64967-0	2007	*

References

#6683

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17002

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32102

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28347 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83575

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398034.1 )

#28347

IJSEM 1901 2007 ( DOI 10.1099/ijs.0.64967-0 , PubMed 17684278 )

* These data were automatically processed and therefore are not curated

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Salinicoccus luteus DSM 17002 DSM 17002

Salinicoccus luteus DSM 17002 DSM 17002

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