Name: Salinicoccus jeotgali S2R53-5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14430

Type strain:

Species: Salinicoccus jeotgali

Strain Designation: S2R53-5

Culture col. no.: DSM 22324, KCTC 13030, LMG 23640, JCM 16981

Strain history: <- ST Lee, KAIST

NCBI tax ID(s): 381634 (species)

SI-ID 291402

LMG 23640, KCTC 13030, JCM 16981, DSM 22324

Section

Salinicoccus jeotgali S2R53-5 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from traditional Korean fermented seafood .

coccus-shaped
Gram-positive
aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Staphylococcaceae*
	Genus	*Salinicoccus*
	Species	**Salinicoccus jeotgali**
	Full Scientific Name (LPSN)	Salinicoccus jeotgali Aslam et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31880]	Gram stain	positive
[Ref.: #67771]	Gram stain	positive

[Ref.: #31880]	Cell length	1.5 µm

[Ref.: #31880]	Cell width	1.5 µm

[Ref.: #31880]	Cell shape	coccus-shaped
[Ref.: #67771]	Cell shape	coccus-shaped

[Ref.: #31880]	Motility	no
[Ref.: #67771]	Motility	no

[Ref.: #31880]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16281]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16281]

Culture medium growth

[Ref.: #16281]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16281]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16281]	growth	28 °C
[Ref.: #31880]	growth	20-30 °C
[Ref.: #31880]	optimum	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #16281]	Temperature range	mesophilic
[Ref.: #31880]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31880]			optimum	7
[Ref.: #31880]			growth	6.5-11.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31880]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #31880]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31880]		NaCl		growth	0.5-15	%
[Ref.: #31880]		NaCl		optimum	5	%

[Ref.: #16281]	Murein short key	A11.02
[Ref.: #16281]	Murein types	A3alpha L-Lys-Gly_5-6

[Ref.: #67770]	Observation	quinones: MK-6, MK-7
[Ref.: #67771]	Observation	quinones: MK-6, MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31880]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #31880]	alanine ChEBI	+	carbon source
[Ref.: #31880]	arabinose ChEBI	+	carbon source
[Ref.: #31880]	citrate ChEBI	+	carbon source
[Ref.: #31880]	esculin ChEBI	+	hydrolysis
[Ref.: #31880]	fructose ChEBI	+	carbon source
[Ref.: #31880]	glucose ChEBI	+	carbon source
[Ref.: #31880]	glycerol ChEBI	+	carbon source
[Ref.: #31880]	histidine ChEBI	+	carbon source
[Ref.: #31880]	lactate ChEBI	+	carbon source
[Ref.: #31880]	maltose ChEBI	+	carbon source
[Ref.: #31880]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #31880]	nitrate ChEBI	+	reduction
[Ref.: #31880]	rhamnose ChEBI	+	carbon source
[Ref.: #31880]	trehalose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #31880]		hydrogen sulfide ChEBI	yes
[Ref.: #31880]		indole ChEBI	yes

	Physiological tests	Metabolite	Indole test
[Ref.: #31880]		indole ChEBI	+

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31880]		catalase	+	1.11.1.6
[Ref.: #31880]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16281]	Sample type/isolated from	traditional Korean fermented seafood (jeotgal)
[Ref.: #16281]	Geographic location (country and/or sea, region)	Daejeon
[Ref.: #16281]	Country	Republic of Korea
[Ref.: #16281]	Country ISO 3 Code	KOR
[Ref.: #16281]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Jeotgal, traditional Korean fermented seafood
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From jeotgal, traditional Korean fermented seafood
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	#Seafood
#Engineered	#Food production	#Fermented

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ471329 (>99% sequence identity) for Salinicoccus from Microbeatlas

Aquatic Samples	331
Soil Samples	348
Animal Samples	1510
Plant Samples	166
Total Samples	2355

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16281]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16281]	Salinicoccus jeotgali strain S2R53-5 16S ribosomal RNA gene, partial sequence	DQ471329	1480	ENA	381634 tax ID

[Ref.: #16281]	GC-content	47.0 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31880]	GC-content	47 mol%
[Ref.: #67770]	GC-content	47 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #16281]

Culture collection no.

DSM 22324, KCTC 13030, LMG 23640, JCM 16981

[Ref.: #83574]

SI-ID 291402

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Salinicoccus kunmingensis sp. nov., a moderately halophilic bacterium isolated from a salt mine in Yunnan, south-west China.	Chen YG, Cui XL, Pukall R, Li HM, Yang YL, Xu LH, Wen ML, Peng Q, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.64783-0	2007	*
Phylogeny	Salinicoccus jeotgali sp. nov., isolated from jeotgal, a traditional Korean fermented seafood.	Aslam Z, Lim JH, Im WT, Yasir M, Chung YR, Lee ST	Int J Syst Evol Microbiol	10.1099/ijs.0.64586-0	2007	*

References

#16281

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22324

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31880

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28140 (see below)

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83574

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291402.1 )

#28140

IJSEM 633 2007 ( DOI 10.1099/ijs.0.64586-0 , PubMed 17329798 )

* These data were automatically processed and therefore are not curated

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