Name: Spirochaeta thermophila RI 19.B1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14322

Type strain:

Species: Spirochaeta thermophila

Strain Designation: RI 19.B1

Culture col. no.: DSM 6192, ATCC 49972

Strain history: <- F. A. Rainey, University of Waikato, Hamilton, New Zealand; RI 19.B1 <- F. A. Rainey {1990}

NCBI tax ID(s): 665571 (strain), 154 (species)

SI-ID 42784

ATCC 49972, DSM 6192

Other strains from Spirochaeta thermophila

S. thermophila Z-1203, DSM 6578, ATCC 700085 (type strain)

Section

Spirochaeta thermophila RI 19.B1 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from water of thermal spring.

Gram-negative
spore-forming
anaerobe
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Spirochaetaceae*
	Genus	*Spirochaeta*
	Species	**Spirochaeta thermophila**
	Full Scientific Name (LPSN)	Spirochaeta thermophila Aksenova et al. 1992

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.806

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2520]

Culture medium

SPIROCHAETA RI 19.B1 MEDIUM (DSMZ Medium 509a)

[Ref.: #2520]

Culture medium growth

[Ref.: #2520]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2520]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2520]			growth	65 °C

[Ref.: #2520]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.644

Information on physiology and metabolism Physiology and metabolism

[Ref.: #2520]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.998

[Ref.: #69481]	Ability of spore formation	yes Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.992

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2520]	Sample type/isolated from	water of thermal spring
[Ref.: #2520]	Geographic location (country and/or sea, region)	Kermadec archipelago, Raoul island, southwest shore of Green Lake
[Ref.: #2520]	Country	New Zealand
[Ref.: #2520]	Country ISO 3 Code	NZL
[Ref.: #2520]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Thermal spring

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #2520]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	S.thermophila 16S rDNA	X62809	1333	ENA	665571 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Spirochaeta thermophila DSM 6192	GCA_000147075	complete	GenBank	665571 tax ID	*
[Ref.: #66792]	Spirochaeta thermophila DSM 6192	665571.4	complete	PATRIC	665571 tax ID	*
[Ref.: #66792]	Spirochaeta thermophila DSM 6192	648028053	complete	JGI IMG/M	665571 tax ID	*

[Ref.: #2520]

GC-content

60.9 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Spirochaeta thermophila DSM 6192 DSM 6192 NCBI: GCA_000147075.1
[Ref.: #69481]	spore-forming	yes	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Spirochaeta thermophila DSM 6192 DSM 6192 NCBI: GCA_000147075.1
[Ref.: #69480]	motile	yes	90.281	no
[Ref.: #69480]	flagellated	no	68.572	no
[Ref.: #69480]	gram-positive	no	94.005	no
[Ref.: #69480]	anaerobic	yes	99.1	yes
[Ref.: #69480]	aerobic	no	97.809	yes
[Ref.: #69480]	halophile	no	83.107	no
[Ref.: #69480]	spore-forming	no	87.094	no
[Ref.: #69480]	thermophile	yes	98.045	no
[Ref.: #69480]	glucose-util	yes	86.617	no
[Ref.: #69480]	glucose-ferment	yes	54.192	no

Availability in culture collections External links

[Ref.: #2520]

Culture collection no.

DSM 6192, ATCC 49972

[Ref.: #83471]

SI-ID 42784

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Novel family of carbohydrate-binding modules revealed by the genome sequence of Spirochaeta thermophila DSM 6192.	Angelov A, Loderer C, Pompei S, Liebl W	Appl Environ Microbiol	10.1128/AEM.00523-11	2011	*
Genetics	Genome sequence of the polysaccharide-degrading, thermophilic anaerobe Spirochaeta thermophila DSM 6192.	Angelov A, Liebl S, Ballschmiter M, Bomeke M, Lehmann R, Liesegang H, Daniel R, Liebl W	J Bacteriol	10.1128/JB.01023-10	2010	*
Metabolism	Glucose catabolism by Spirochaeta thermophila RI 19.B1.	Janssen PH, Morgan HW	J Bacteriol	10.1128/jb.174.8.2449-2453.1992	1992	*
	Phosphofructokinase activities within the order spirochaetales and the characterisation of the pyrophosphate-dependent phosphofructokinase from spirochaeta thermophila	Ronimus RS, Morgan HW, Ding YR	Arch Microbiol	10.1007/s002030050777	1999	*

References

#2520

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 6192

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83471

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42784.1 )

* These data were automatically processed and therefore are not curated

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Spirochaeta thermophila DSM 6192 DSM 6192

Spirochaeta thermophila DSM 6192 DSM 6192

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