Name: Sphingomonas faeni MA-olki
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14234

Type strain:

Species: Sphingomonas faeni

Strain Designation: MA-olki

Culture col. no.: DSM 14747, LMG 21379, CCUG 48436, CIP 108370

Strain history: CIP <- 2004, P. Kämpfer, Giessen Univ., Giessen, Germany <- M. Andersson: strain MA-olki

NCBI tax ID(s): 185950 (species)

SI-ID 86185

LMG 21379, DSM 14747, CCUG 48436, CIP 108370

Section

Sphingomonas faeni MA-olki is an obligate aerobe, psychrophilic, Gram-negative bacterium that was isolated from indoor dusts in animal sheds.

Gram-negative
obligate aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas faeni**
	Full Scientific Name (LPSN)	Sphingomonas faeni Busse et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #119271]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.961

[Ref.: #119271]	Cell shape	rod-shaped

[Ref.: #119271]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5442]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5442]

Culture medium growth

[Ref.: #5442]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5442]

Culture medium composition

expand / minimize

[Ref.: #5442]

Culture medium

YEAST-PEPTONE-SUCCINATE MEDIUM (DSMZ Medium 988)

[Ref.: #5442]

Culture medium growth

[Ref.: #5442]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5442]

Culture medium composition

expand / minimize

[Ref.: #33958]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #33958]

Culture medium growth

[Ref.: #33958]

Culture medium composition

expand / minimize

[Ref.: #119271]

Culture medium

CIP Medium 566

[Ref.: #119271]

Culture medium growth

[Ref.: #119271]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5442]		growth	22 °C
[Ref.: #33958]		growth	22 °C
[Ref.: #119271]		growth	10-25 °C
[Ref.: #119271]	no	growth	5 °C
[Ref.: #119271]	no	growth	30 °C
[Ref.: #119271]	no	growth	37 °C
[Ref.: #119271]	no	growth	41 °C

[Ref.: #5442]	Temperature range	psychrophilic
[Ref.: #33958]	Temperature range	psychrophilic
[Ref.: #119271]	Temperature range	psychrophilic
[Ref.: #119271]	Temperature range	mesophilic
[Ref.: #119271]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119271]

Oxygen tolerance

obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.943

	Salt	Tested relation		Salt conc.
[Ref.: #119271]	NaCl		growth	0-2	%
[Ref.: #119271]	NaCl	no	growth	4	%
[Ref.: #119271]	NaCl	no	growth	6	%
[Ref.: #119271]	NaCl	no	growth	8	%
[Ref.: #119271]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119271]	esculin ChEBI	+	hydrolysis
[Ref.: #119271]	nitrate ChEBI	-	reduction
[Ref.: #119271]	nitrite ChEBI	-	reduction

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119271]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #119271]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119271]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119271]	amylase	-
[Ref.: #119271]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119271]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #119271]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119271]	gelatinase	-
[Ref.: #119271]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119271]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119271]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119271]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119271]	oxidase	-
[Ref.: #119271]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119271]	tryptophan deaminase	-
[Ref.: #119271]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119271]	11124	-	+	+	+	-	+	+	-	-	-	+	+	-	+	-	+	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5442]	Sample type/isolated from	indoor dusts in animal sheds
[Ref.: #5442]	Country	Finland
[Ref.: #5442]	Country ISO 3 Code	FIN
[Ref.: #5442]	Continent	Europe

[Ref.: #58158]	Sample type/isolated from	Whirled-up dust in a cow barn
[Ref.: #58158]	Country	Finland
[Ref.: #58158]	Country ISO 3 Code	FIN
[Ref.: #58158]	Continent	Europe

[Ref.: #119271]	Sample type/isolated from	Environment, Indoor dusts in animal sheds
[Ref.: #119271]	Country	Finland
[Ref.: #119271]	Country ISO 3 Code	FIN
[Ref.: #119271]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Livestock (Husbandry)
#Engineered	#Built environment	#Indoor
#Engineered	#Waste	#Dust (Ash)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ429239 (>99% sequence identity) for Sphingomonas from Microbeatlas

Aquatic Samples	7018
Soil Samples	6757
Animal Samples	12267
Plant Samples	9299
Total Samples	35341

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5442]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119271]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5442]	Sphingomonas faenia partial 16S rRNA gene, strain MA-olki	AJ429239	1457	ENA	185950 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Sphingomonas faeni MA-olki	GCA_003053745	scaffold	GenBank	185950 tax ID	*

[Ref.: #5442]

GC-content

63.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Sphingomonas faeni MA-olki NCBI: GCA_003053745.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingomonas faeni MA-olki NCBI: GCA_003053745.1
[Ref.: #69480]	flagellated	no	92.261	no
[Ref.: #69480]	gram-positive	no	97.53	no
[Ref.: #69480]	anaerobic	no	98.987	no
[Ref.: #69480]	halophile	no	94.943	no
[Ref.: #69480]	spore-forming	no	93.916	no
[Ref.: #69480]	thermophile	no	99.476	no
[Ref.: #69480]	glucose-util	yes	90.264	no
[Ref.: #69480]	aerobic	yes	93.166	no
[Ref.: #69480]	motile	yes	75.227	no
[Ref.: #69480]	glucose-ferment	no	89.83	no

Availability in culture collections External links

[Ref.: #5442]

Culture collection no.

DSM 14747, LMG 21379, CCUG 48436, CIP 108370

[Ref.: #83393]

SI-ID 86185

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas olei sp. nov., with the ability to degrade aliphatic hydrocarbons, isolated from oil-contaminated soil.	Chaudhary DK, Kim J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002010	2017	*
Phylogeny	Sphingomonas ginsenosidivorax sp. nov., with the ability to transform ginsenosides.	Jin XF, Kim JK, Liu QM, Kang MS, He D, Jin FX, Kim SC, Im WT	Antonie Van Leeuwenhoek	10.1007/s10482-013-9916-2	2013	*
Phylogeny	Sphingomonas kaistensis sp. nov., a novel alphaproteobacterium containing pufLM genes.	Kim MK, Schubert K, Im WT, Kim KH, Lee ST, Overmann J	Int J Syst Evol Microbiol	10.1099/ijs.0.64579-0	2007	*
Phylogeny	Sphingomonas aurantiaca sp. nov., Sphingomonas aerolata sp. nov. and Sphingomonas faeni sp. nov., air- and dustborne and Antarctic, orange-pigmented, psychrotolerant bacteria, and emended description of the genus Sphingomonas.	Busse HJ, Denner EBM, Buczolits S, Salkinoja-Salonen M, Bennasar A, Kampfer P	Int J Syst Evol Microbiol	10.1099/ijs.0.02461-0	2003	*

References

#5442

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14747

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#33958 ; Curators of the CIP;
#58158 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 48436

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#83393

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID86185.1 )

#119271 Collection of Institut Pasteur ; Curators of the CIP; CIP 108370
* These data were automatically processed and therefore are not curated

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