Name: Sphingomonas sanguinis DSM 13885
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14227

Type strain:

Species: Sphingomonas sanguinis

Culture col. no.: DSM 13885, GIFU 2397, IFO 13937, JCM 7514, NBRC 13937, NCTC 11032, ATCC 51382, BCRC 17636, CCUG 27654, CCUG 31194, CDC B4562, CIP 104197, IAM 12578, IAM 14273, LMG 10925, LMG 17325, LMG 2240

Strain history: CIP <- 1994, IFO, Sphingomonas sanguis <- E. Yabuuchi, Kansai Med. Univ., Japan <- NCTC <- CDC: strain B4562, Pseudomonas paucimobilis

NCBI tax ID(s): 1219054 (strain), 33051 (species)

SI-ID 4987

LMG 10925, ATCC 51382, CCUG 27654, CCUG 31194, CIP 104197, IFO 13937, JCM 7514, LMG 17325, LMG 2240, NCTC 11032, DSM 13885, CCM 3295, NBRC 13937, HAMBI 2010, NCIMB 13824, BCRC 13955, CCRC 13955, IAM 14273, IAM 12578, CFBP 3009, BCRC 17636

Section

Sphingomonas sanguinis DSM 13885 is an obligate aerobe, mesophilic, Gram-negative human pathogen that was isolated from blood.

Gram-negative
motile
rod-shaped
human pathogen
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas sanguinis**
	Full Scientific Name (LPSN)	Sphingomonas sanguinis corrig. Takeuchi et al. 1993

Synonym

Sphingomonas sanguis

Information on morphological and physiological properties Morphology

[Ref.: #122429]	Gram stain	negative

[Ref.: #122429]	Cell shape	rod-shaped

[Ref.: #122429]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5189]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #5189]

Culture medium growth

[Ref.: #5189]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5189]

Culture medium composition

expand / minimize

[Ref.: #37284]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #37284]

Culture medium growth

[Ref.: #37284]

Culture medium composition

expand / minimize

[Ref.: #122429]

Culture medium

CIP Medium 6

[Ref.: #122429]

Culture medium growth

[Ref.: #122429]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5189]		growth	30 °C
[Ref.: #37284]		growth	30 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #122429]		growth	22-37 °C
[Ref.: #122429]	no	growth	5 °C
[Ref.: #122429]	no	growth	10 °C

[Ref.: #5189]	Temperature range	mesophilic
[Ref.: #37284]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122429]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122429]

Oxygen tolerance

obligate aerobe

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #122429]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #122429]	nitrate ChEBI	-	builds gas from
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #122429]	nitrite ChEBI	-	builds gas from
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122429]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #122429]		indole ChEBI	no
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #122429]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #122429]	catalase	+	1.11.1.6
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #122429]	DNase	+/-
[Ref.: #122429]	gelatinase	+/-
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #122429]	lysine decarboxylase	-	4.1.1.18
[Ref.: #122429]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122429]	oxidase	+
[Ref.: #122429]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #122429]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #5189]	23206	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122429]	598	not determinedn.d.	+	+	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	+	-	+	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	+	-	-	-	+	+	-	-	+	-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5189]	Sample type/isolated from	blood
[Ref.: #5189]	Country	USA
[Ref.: #5189]	Country ISO 3 Code	USA
[Ref.: #5189]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Blood

[Ref.: #122429]	Sample type/isolated from	Human, Blood
[Ref.: #122429]	Country	United States of America
[Ref.: #122429]	Country ISO 3 Code	USA
[Ref.: #122429]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5189]	Pathogenicity (human)	yes, in single cases
[Ref.: #5189]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122429]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sphingomonas sanguinis 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	GQ907189	761	ENA	33051 tax ID	*
[Ref.: #20218]	Sphingomonas paucimobilis strain BCRC 13955 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014534	758	ENA	13689 tax ID	*
[Ref.: #20218]	Sphingomonas genospecies-1 16S ribosomal RNA, partial sequence	D38428	156	ENA	35807 tax ID	*
[Ref.: #20218]	Sphingomonas sanguinis gene for 16S rRNA, partial sequence	D13726	1414	ENA	33051 tax ID	*
[Ref.: #20218]	Sphingomonas sanguinis gene for 16S ribosomal RNA	D84529	1359	ENA	33051 tax ID	*
[Ref.: #20218]	Sphingomonas sanguinis gene for 16S rRNA, partial sequence, strain: NBRC 13937	AB680528	1412	ENA	33051 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingomonas sanguinis NBRC 13937	GCA_001591005	contig	GenBank	1219054 tax ID
[Ref.: #66792]	Sphingomonas paucimobilis strain NCTC11032	13689.17	wgs	PATRIC	13689 tax ID	*
[Ref.: #66792]	Sphingomonas sanguinis NBRC 13937	1219054.3	wgs	PATRIC	1219054 tax ID	*
[Ref.: #66792]	Sphingomonas sanguinis NBRC 13937	2731957633	draft	JGI IMG/M	1219054 tax ID	*

[Ref.: #67770]	GC-content	61.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	62.1 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Sphingomonas sanguinis NBRC 13937 PATRIC: 1219054.3
[Ref.: #69480]	motile	yes	67.212	no
[Ref.: #69480]	gram-positive	no	97.078	no
[Ref.: #69480]	anaerobic	no	99.313	no
[Ref.: #69480]	aerobic	yes	95	no
[Ref.: #69480]	halophile	no	94.013	no
[Ref.: #69480]	spore-forming	no	93.745	no
[Ref.: #69480]	thermophile	no	98.749	no
[Ref.: #69480]	glucose-util	yes	92.662	no
[Ref.: #69480]	flagellated	no	91.069	no
[Ref.: #69480]	glucose-ferment	no	90.763	yes

Availability in culture collections External links

[Ref.: #5189]

Culture collection no.

DSM 13885, GIFU 2397, IFO 13937, JCM 7514, NBRC 13937, NCTC 11032, ATCC 51382, BCRC 17636, CCUG 27654, CCUG 31194, CDC B4562, CIP 104197, IAM 12578, IAM 14273, LMG 10925, LMG 17325, LMG 2240

[Ref.: #83386]

SI-ID 4987

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas aeria sp. nov., isolated from air.	Xue H, Piao CG, Wang XZ, Lin CL, Guo MW, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002910	2018	*
Phylogeny	Sphingomonas jatrophae sp. nov. and Sphingomonas carotinifaciens sp. nov., two yellow-pigmented endophytes isolated from stem tissues of Jatropha curcas L.	Madhaiyan M, Alex THH, Cho H, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002434	2017	*
Phylogeny	Sphingomonas morindae sp. nov., isolated from Noni (Morinda citrifolia L.) branch.	Liu Y, Yao S, Lee YJ, Cao Y, Zhai L, Zhang X, Su J, Ge Y, Kim SG, Cheng C	Int J Syst Evol Microbiol	10.1099/ijs.0.000340	2015	*

References

#5189

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13885

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37284 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#83386

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID4987.1 )

#122429 Collection of Institut Pasteur ; Curators of the CIP; CIP 104197
* These data were automatically processed and therefore are not curated

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Sphingomonas sanguinis NBRC 13937

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