Name: Sphingomonas sanguinis DSM 13885
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 14227

Type strain:

Species: Sphingomonas sanguinis

Culture col. no.: DSM 13885, GIFU 2397, IFO 13937, JCM 7514, NBRC 13937, NCTC 11032, ATCC 51382, BCRC 17636, CCUG 27654, CCUG 31194, CDC B4562, CIP 104197, IAM 12578, IAM 14273, LMG 10925, LMG 17325, LMG 2240

Strain history: GIFU 2397 <-- NCTC 11032 <-- R. E. Weaver DCD B4562.

NCBI tax ID(s): 1219054 (strain), 33051 (species)

Section

Sphingomonas sanguinis DSM 13885 is a mesophilic human pathogen that was isolated from blood.

human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas sanguinis**
	Full Scientific Name (PNU)	Sphingomonas sanguinis corrig. Takeuchi et al. 1993

Synonym

Sphingomonas sanguis

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5189]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #5189]

Culture medium growth

[Ref.: #5189]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5189]

Culture medium composition

expand / minimize

[Ref.: #37284]

Culture medium

MEDIUM 6 - Columbia agar with 10 % horse blood

[Ref.: #37284]

Culture medium growth

[Ref.: #37284]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5189]	growth	30 °C
[Ref.: #37284]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #5189]	Temperature range	mesophilic
[Ref.: #37284]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	-	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #5189]	20597	-	-	-	-	-	+	-	+	+	+	+	-	+	+	-	-	-	+	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5189]	Sample type/isolated from	blood
[Ref.: #5189]	Country	USA
[Ref.: #5189]	Country ISO 3 Code	USA
[Ref.: #5189]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Blood
* marker position based on {}

Isolation sources categories

#Host Body Product	#Fluids	#Blood
#Infection	#Patient	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5189]	Pathogenicity (human)	yes, in single cases
[Ref.: #5189]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Sphingomonas sanguinis 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	GQ907189	761	ENA	33051 tax ID	*
[Ref.: #20218]	Sphingomonas paucimobilis strain BCRC 13955 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014534	758	ENA	13689 tax ID	*
[Ref.: #20218]	Sphingomonas genospecies-1 16S ribosomal RNA, partial sequence	D38428	156	ENA	35807 tax ID	*
[Ref.: #20218]	Sphingomonas sanguinis gene for 16S rRNA, partial sequence	D13726	1414	ENA	33051 tax ID	*
[Ref.: #20218]	Sphingomonas sanguinis gene for 16S ribosomal RNA	D84529	1359	ENA	33051 tax ID	*
[Ref.: #20218]	Sphingomonas sanguinis gene for 16S rRNA, partial sequence, strain: NBRC 13937	AB680528	1412	ENA	33051 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sphingomonas sanguinis NBRC 13937 NBRC 13937	GCA_001591005	contig	GenBank	1219054 tax ID
[Ref.: #67770]	Streptococcus pneumoniae NCTC11032	GCA_900618125	contig	GenBank	1313 tax ID
[Ref.: #66792]	Sphingomonas paucimobilis strain NCTC11032	13689.17	wgs	PATRIC	13689 tax ID	*
[Ref.: #66792]	Sphingomonas sanguinis NBRC 13937	1219054.3	wgs	PATRIC	1219054 tax ID	*
[Ref.: #66792]	Sphingomonas sanguinis NBRC 13937	2731957633	draft	JGI IMG/M	1219054 tax ID	*

[Ref.: #67770]	GC-content	61.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	62.1 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5189]

Culture collection no.

DSM 13885, GIFU 2397, IFO 13937, JCM 7514, NBRC 13937, NCTC 11032, ATCC 51382, BCRC 17636, CCUG 27654, CCUG 31194, CDC B4562, CIP 104197, IAM 12578, IAM 14273, LMG 10925, LMG 17325, LMG 2240

[Ref.: #20218]

Associated Passport(s) in StrainInfo

163876, 21734, 21735, 21736, 335349, 21741

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas aeria sp. nov., isolated from air.	Xue H, Piao CG, Wang XZ, Lin CL, Guo MW, Li Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.002910	2018	*
Phylogeny	Sphingomonas jatrophae sp. nov. and Sphingomonas carotinifaciens sp. nov., two yellow-pigmented endophytes isolated from stem tissues of Jatropha curcas L.	Madhaiyan M, Alex THH, Cho H, Kim SJ, Weon HY, Kwon SW, Whitman WB, Ji L	Int J Syst Evol Microbiol	10.1099/ijsem.0.002434	2017	*
Phylogeny	Sphingomonas morindae sp. nov., isolated from Noni (Morinda citrifolia L.) branch.	Liu Y, Yao S, Lee YJ, Cao Y, Zhai L, Zhang X, Su J, Ge Y, Kim SG, Cheng C	Int J Syst Evol Microbiol	10.1099/ijs.0.000340	2015	*

References

#5189

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13885

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37284 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

* These data were automatically processed and therefore are not curated

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