Strain identifier

BacDive ID: 14227

Type strain: Yes

Species: Sphingomonas sanguinis

Culture col. no.: DSM 13885, GIFU 2397, IFO 13937, JCM 7514, NBRC 13937, NCTC 11032

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 5189

BacDive-ID: 14227

DSM-Number: 13885

keywords: mesophilic, Bacteria, 16S sequence, genome sequence, human pathogen

description: Sphingomonas sanguinis DSM 13885 is a mesophilic human pathogen that was isolated from blood.

strain history: <- JCM <- GIFU <- NCTC <- R. E. Weaver, CDC

doi: 10.13145/bacdive14227.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Sphingomonadaceae
  • genus: Sphingomonas
  • species: Sphingomonas sanguinis
  • full scientific name: Sphingomonas sanguinis corrig. Takeuchi et al. 1993
  • synonyms

    • @ref: 20215
    • synonym: Sphingomonas sanguis

@ref: 5189

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sanguinis

full scientific name: Sphingomonas sanguinis Takeuchi et al. 1993

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5189BHI MEDIUM (DSMZ Medium 215)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium215.pdf
37284MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
5189positivegrowth30mesophilic
37284positivegrowth30mesophilic

Physiology and metabolism

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
5189-----+-++++-++---+---

Isolation, sampling and environmental information

isolation

  • @ref: 5189
  • sample type: blood
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Blood

Safety information

risk assessment

  • @ref: 5189
  • pathogenicity human: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Sphingomonas sanguinis 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceGQ907189761ena33051
20218Sphingomonas paucimobilis strain BCRC 13955 16S-23S ribosomal RNA intergenic spacer, complete sequenceEU014534758ena13689
20218Sphingomonas genospecies-1 16S ribosomal RNA, partial sequenceD38428156ena35807
20218Sphingomonas sanguinis gene for 16S rRNA, partial sequenceD137261414ena33051
20218Sphingomonas sanguinis gene for 16S ribosomal RNAD845291359ena33051
20218Sphingomonas sanguinis gene for 16S rRNA, partial sequence, strain: NBRC 13937AB6805281412ena33051

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sphingomonas sanguinis NBRC 13937GCA_001591005contigncbi1219054
66792Sphingomonas sanguinis IIF7SW-B5GCA_013002765scaffoldncbi33051
66792Sphingomonas sanguinis IIF7SW-B3AGCA_013002775scaffoldncbi33051
66792Sphingomonas sanguinis SB4GCA_001476905contigncbi33051
66792Sphingomonas sanguinis NS258GCA_001477315contigncbi33051
66792Sphingomonas sanguinis NS319GCA_001476495contigncbi33051
66792Sphingomonas sanguinis UBA3959GCA_002385305scaffoldncbi33051
66792Sphingomonas sanguinis NBRC 139371219054.3wgspatric1219054
66792Sphingomonas sanguinis strain NS25833051.5wgspatric33051
66792Sphingomonas sanguinis strain NS31933051.3wgspatric33051
66792Sphingomonas sanguinis strain SB433051.4wgspatric33051
66792Sphingomonas sanguinis strain UBA395933051.13wgspatric33051

External links

@ref: 5189

culture collection no.: DSM 13885, GIFU 2397, IFO 13937, JCM 7514, NBRC 13937, NCTC 11032

straininfo link

@refpassport
20218http://www.straininfo.net/strains/163876
20218http://www.straininfo.net/strains/21734
20218http://www.straininfo.net/strains/21735
20218http://www.straininfo.net/strains/21736
20218http://www.straininfo.net/strains/335349
20218http://www.straininfo.net/strains/21741

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5189Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13885)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13885
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37284Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16079
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)