Yersinia frederiksenii (CCUG 8246)

Name: Yersinia frederiksenii (CCUG 8246)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141900

Type strain

Culture col. no. CCUG 8246

NCBI tax ID(s) 29484

Special Collections CCUG

Links

Yersinia frederiksenii CCUG 8246 is an aerobe bacterium that was isolated from Human.

aerobe Bacteria

Name and taxonomic classification

SI-ID 58380

CCUG 8246

@ref 20215

Last LPSN update 2026-05-29 08:40:04

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia frederiksenii

Full scientific name Yersinia frederiksenii Ursing et al. 1981

BacDive ID	Other strains from **Yersinia frederiksenii** (7)	Type strain
5222	Y. frederiksenii DSM 18490, ATCC 33641, CCUG 11293, CIP 80.29, ... (type strain)
138095	Y. frederiksenii CIP 104894, CNY 25148
138100	Y. frederiksenii CIP 104895, CNY 24886
144801	Y. frederiksenii CCUG 26586
144809	Y. frederiksenii CCUG 26594
144879	Y. frederiksenii CCUG 26949
145997	Y. frederiksenii CCUG 30114

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
45091	positive	growth	30-37

Physiology and metabolism

Oxygen tolerance

45091

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68374	29016 ChEBI	arginine	-	hydrolysis	from API ID32E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68374	17057 ChEBI	cellobiose	+	builds acid from	from API ID32E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68374	18333 ChEBI	D-arabitol	+	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	+	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68374	30849 ChEBI	L-arabinose	+	builds acid from	from API ID32E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	-	builds acid from	from API ID32E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
68374	17306 ChEBI	maltose	+	builds acid from	from API ID32E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68374	17268 ChEBI	myo-inositol	+	builds acid from	from API ID32E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68374	18257 ChEBI	ornithine	+	degradation	from API ID32E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374	0 ChEBI	Potassium 5-ketogluconate	+	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	+	builds acid from	from API ID32E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68374	17992 ChEBI	sucrose	+	builds acid from	from API ID32E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	+	energy source	from API ID32E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68374	16199 ChEBI	urea	+	hydrolysis	from API ID32E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68374	35581 ChEBI	indole	from API ID32E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68374	35581 ChEBI	indole		+	from API ID32E
68368	35581 ChEBI	indole		+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68374	alpha-galactosidase	-	3.2.1.22	from API ID32E
68374	alpha-glucosidase	-	3.2.1.20	from API ID32E
68374	alpha-maltosidase	-		from API ID32E
68374	arginine dihydrolase	-	3.5.3.6	from API ID32E
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68374	beta-glucosidase	+	3.2.1.21	from API ID32E
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68374	lipase	-		from API ID32E
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68374	ornithine decarboxylase	+	4.1.1.17	from API ID32E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68374	urease	+	3.5.1.5	from API ID32E
68368	urease	+	3.5.1.5	from API 20E

Fatty acid profile

Metadata FA analysis

@ref

45091

Fatty acid	Percentage	ECL
C16:0	32	16
C17:0 CYCLO	26.9	16.888
C16:1 ω7c	12.4	15.819
C18:1 ω7c /12t/9t	7.9	17.824
C14:0 3OH/C16:1 ISO I	7.7	15.485
C12:0	6.2	12
C14:0	1.2	14
C15:0	0.8	15
C12:0 2OH	0.6	13.178
unknown 14.503	0.6	14.503
unknown 13.961	0.6	13.961
C19:0 CYCLO ω8c	0.6	18.9
unknown 18.445	0.6	18.445
C17:0	0.6	17
Unidentified	0.4	15.182
Unidentified	0.4	16.095
C18:0	0.3	18
C16:1 ω5c	0.2	15.908
C18:2 ω6,9c/C18:0 ANTE	0.2	17.724

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
45091	+	-	-	+	-	-	+	-	+	-	-	+	+	+	+	+	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
45091	+	-	-	+	-	+	+	-	-	+	+	+	-	-	-	-	+	-	+	+	+	+	+	-	-	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human

Isolation

@ref	Sample type	Host species
45091	Human	Homo sapiens

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#45091	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 8246
#68368	Automatically annotated from API 20E .
#68374	Automatically annotated from API ID32E .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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