Strain identifier

BacDive ID: 141900

Type strain: No

Species: Yersinia frederiksenii

NCBI tax ID(s): 29484 (species)

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General

@ref: 45091

BacDive-ID: 141900

keywords: Bacteria, aerobe, mesophilic

description: Yersinia frederiksenii CCUG 8246 is an aerobe, mesophilic bacterium that was isolated from Human.

NCBI tax id

  • NCBI tax id: 29484
  • Matching level: species

doi: 10.13145/bacdive141900.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Yersinia
  • species: Yersinia frederiksenii
  • full scientific name: Yersinia frederiksenii Ursing et al. 1981

@ref: 45091

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacterales

family: Yersiniaceae

genus: Yersinia

species: Yersinia frederiksenii

type strain: no

Culture and growth conditions

culture temp

  • @ref: 45091
  • growth: positive
  • type: growth
  • temperature: 30-37
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 45091
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea+hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
6837418257ornithine+degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea+hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate+builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol+builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol+builds acid from
6837417057cellobiose+builds acid from
6837430911sorbitol+builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleyes
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837435581indole+
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease+3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45091C12:06.212
    45091C14:01.214
    45091C15:00.815
    45091C16:03216
    45091C17:00.617
    45091C18:00.318
    45091C12:0 2OH0.613.178
    45091C14:0 3OH/C16:1 ISO I7.715.485
    45091C16:1 ω5c0.215.908
    45091C16:1 ω7c12.415.819
    45091C17:0 CYCLO26.916.888
    45091C18:1 ω7c /12t/9t7.917.824
    45091C18:2 ω6,9c/C18:0 ANTE0.217.724
    45091C19:0 CYCLO ω8c0.618.9
    45091Unidentified0.415.182
    45091Unidentified0.416.095
    45091unknown 13.9610.613.961
    45091unknown 14.5030.614.503
    45091unknown 18.4450.618.445
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
45091+--+--+-+--++++++-++-

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
45091+--+-++--+++----+-+++++--+-+++--

Isolation, sampling and environmental information

isolation

  • @ref: 45091
  • sample type: Human

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

External links

@ref: 45091

culture collection no.: CCUG 8246

straininfo link

  • @ref: 97499
  • straininfo: 58380

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
45091Curators of the CCUGhttps://www.ccug.se/strain?id=8246Culture Collection University of Gothenburg (CCUG) (CCUG 8246)
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
97499Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID58380.1