Pseudomonas oryzihabitans (CCUG 3993)

Name: Pseudomonas oryzihabitans (CCUG 3993)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141624

Type strain

Culture col. no. CCUG 3993

NCBI tax ID(s) 47885

Special Collections CCUG

Links

Pseudomonas oryzihabitans CCUG 3993 is a bacterium that was isolated from Human urine.

Bacteria

Name and taxonomic classification

SI-ID 215339

CCUG 3993

@ref 20215

Last LPSN update 2026-05-29 08:40:00

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas oryzihabitans

Full scientific name Pseudomonas oryzihabitans Kodama et al. 1985

Synonyms (2)

Flavimonas oryzihabitans
Chryseomonas oryzihabitans

BacDive ID	Other strains from **Pseudomonas oryzihabitans** (51)	Type strain
13048	P. oryzihabitans KS0036, L-1, KS 0036, DSM 6835, ATCC 43272, ... (type strain)
134885	P. oryzihabitans 706-86, CIP 102685
134908	P. oryzihabitans 739-86, CIP 102739
136276	P. oryzihabitans Cor, CIP 104149
136277	P. oryzihabitans Man, CIP 104150
137866	P. oryzihabitans 904-85, CIP 101989
141211	P. oryzihabitans CCUG 203
141388	P. oryzihabitans CCUG 1366 A
141501	P. oryzihabitans CCUG 2415
141514	P. oryzihabitans CCUG 2503 A
141648	P. oryzihabitans CCUG 4329
141788	P. oryzihabitans CCUG 6826 A
141985	P. oryzihabitans CCUG 9468
142021	P. oryzihabitans CCUG 9987
142963	P. oryzihabitans CCUG 15934
143253	P. oryzihabitans CCUG 18069
143392	P. oryzihabitans CCUG 18848
143424	P. oryzihabitans CCUG 19081
143689	P. oryzihabitans CCUG 21017, NCTC 11851
144922	P. oryzihabitans CCUG 27098
145659	P. oryzihabitans CCUG 29166
146533	P. oryzihabitans CCUG 31383
146668	P. oryzihabitans CCUG 31756
147455	P. oryzihabitans CCUG 33606
148010	P. oryzihabitans CCUG 34662 B
148361	P. oryzihabitans CCUG 35283
149886	P. oryzihabitans CCUG 38613
150231	P. oryzihabitans CCUG 39334
152484	P. oryzihabitans CCUG 46912
153865	P. oryzihabitans CCUG 51429
153866	P. oryzihabitans CCUG 51430
156061	P. oryzihabitans CCUG 60244
164828	P. oryzihabitans JCM 3829, IAM 1601
164829	P. oryzihabitans JCM 3830, IAM 1611
164830	P. oryzihabitans JCM 3831, IAM 1620
164832	P. oryzihabitans JCM 3833, IAM 1580
164833	P. oryzihabitans JCM 3834, IAM 1591
164834	P. oryzihabitans JCM 3835, ATCC 43274, IAM 13017
164835	P. oryzihabitans JCM 3836, IAM 13018
164836	P. oryzihabitans JCM 3837, IAM 13019
164837	P. oryzihabitans JCM 3838, IAM 13020
164838	P. oryzihabitans JCM 3839, IAM 13021
164839	P. oryzihabitans JCM 3840, IAM 13022
164840	P. oryzihabitans JCM 3841, IAM 13023
164841	P. oryzihabitans JCM 3842, IAM 13024
164842	P. oryzihabitans JCM 3843, ATCC 43271, IAM 13025
164843	P. oryzihabitans JCM 3844, IAM 13026
164844	P. oryzihabitans JCM 3845, IAM 13027
164845	P. oryzihabitans JCM 3846, IAM 13028
164846	P. oryzihabitans JCM 3847, IAM 13029
174848	P. oryzihabitans 116517, DSM 116517

Morphology

Culture and growth conditions

Physiology and metabolism

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	methylglyoxal degradation	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	biotin biosynthesis	100	4 of 4
66794	ketogluconate metabolism	100	8 of 8
66794	starch degradation	100	10 of 10
66794	quinate degradation	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	formaldehyde oxidation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	NAD metabolism	94.44	17 of 18
66794	vitamin B12 metabolism	94.12	32 of 34
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	phenylalanine metabolism	92.31	12 of 13
66794	vitamin B6 metabolism	90.91	10 of 11
66794	proline metabolism	90.91	10 of 11
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	purine metabolism	81.91	77 of 94
66794	glycine betaine biosynthesis	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	degradation of sugar acids	80	20 of 25
66794	peptidoglycan biosynthesis	80	12 of 15
66794	arginine metabolism	79.17	19 of 24
66794	citric acid cycle	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	allantoin degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	methionine metabolism	76.92	20 of 26
66794	vitamin B1 metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	histidine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	lysine metabolism	73.81	31 of 42
66794	metabolism of disaccharids	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	oxidative phosphorylation	72.53	66 of 91
66794	alanine metabolism	72.41	21 of 29
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	octane oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	sulfate reduction	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	tryptophan metabolism	57.89	22 of 38
66794	degradation of hexoses	55.56	10 of 18
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	polyamine pathway	52.17	12 of 23
66794	ribulose monophosphate pathway	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	arachidonic acid metabolism	50	9 of 18
66794	cyclohexanol degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	coenzyme M biosynthesis	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	carotenoid biosynthesis	45.45	10 of 22
66794	phenol degradation	45	9 of 20
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	glycine metabolism	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Fluids	#Urine

Isolation

@ref	Sample type	Host species	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
44700	Human urine	Homo sapiens	1974	Göteborg	Sweden	SWE	Europe

Interaction and safety

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#44700	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 3993
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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