Pseudomonas oryzihabitans (CIP 101989, 904-85)

Name: Pseudomonas oryzihabitans (CIP 101989, 904-85)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 137866

Type strain

Strain Designation 904-85

Culture col. no. CIP 101989 904-85

NCBI tax ID(s) 47885

Special Collections CIP

History CIP <- 1985, Lab. Ident. Inst. Pasteur, Paris, France: strain 904-85 <- Besançon Hosp., France

Links

Pseudomonas oryzihabitans 904-85 is a Gram-negative, motile, rod-shaped bacterium of the family Pseudomonadaceae.

Gram-negative motile rod-shaped Bacteria

Name and taxonomic classification

SI-ID 69811

CIP 101989

@ref 20215

Last LPSN update 2026-05-29 08:39:08

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Pseudomonadales

Family Pseudomonadaceae

Genus Pseudomonas

Species Pseudomonas oryzihabitans

Full scientific name Pseudomonas oryzihabitans Kodama et al. 1985

Synonyms (2)

Flavimonas oryzihabitans
Chryseomonas oryzihabitans

BacDive ID	Other strains from **Pseudomonas oryzihabitans** (51)	Type strain
13048	P. oryzihabitans KS0036, L-1, KS 0036, DSM 6835, ATCC 43272, ... (type strain)
134885	P. oryzihabitans 706-86, CIP 102685
134908	P. oryzihabitans 739-86, CIP 102739
136276	P. oryzihabitans Cor, CIP 104149
136277	P. oryzihabitans Man, CIP 104150
141211	P. oryzihabitans CCUG 203
141388	P. oryzihabitans CCUG 1366 A
141501	P. oryzihabitans CCUG 2415
141514	P. oryzihabitans CCUG 2503 A
141624	P. oryzihabitans CCUG 3993
141648	P. oryzihabitans CCUG 4329
141788	P. oryzihabitans CCUG 6826 A
141985	P. oryzihabitans CCUG 9468
142021	P. oryzihabitans CCUG 9987
142963	P. oryzihabitans CCUG 15934
143253	P. oryzihabitans CCUG 18069
143392	P. oryzihabitans CCUG 18848
143424	P. oryzihabitans CCUG 19081
143689	P. oryzihabitans CCUG 21017, NCTC 11851
144922	P. oryzihabitans CCUG 27098
145659	P. oryzihabitans CCUG 29166
146533	P. oryzihabitans CCUG 31383
146668	P. oryzihabitans CCUG 31756
147455	P. oryzihabitans CCUG 33606
148010	P. oryzihabitans CCUG 34662 B
148361	P. oryzihabitans CCUG 35283
149886	P. oryzihabitans CCUG 38613
150231	P. oryzihabitans CCUG 39334
152484	P. oryzihabitans CCUG 46912
153865	P. oryzihabitans CCUG 51429
153866	P. oryzihabitans CCUG 51430
156061	P. oryzihabitans CCUG 60244
164828	P. oryzihabitans JCM 3829, IAM 1601
164829	P. oryzihabitans JCM 3830, IAM 1611
164830	P. oryzihabitans JCM 3831, IAM 1620
164832	P. oryzihabitans JCM 3833, IAM 1580
164833	P. oryzihabitans JCM 3834, IAM 1591
164834	P. oryzihabitans JCM 3835, ATCC 43274, IAM 13017
164835	P. oryzihabitans JCM 3836, IAM 13018
164836	P. oryzihabitans JCM 3837, IAM 13019
164837	P. oryzihabitans JCM 3838, IAM 13020
164838	P. oryzihabitans JCM 3839, IAM 13021
164839	P. oryzihabitans JCM 3840, IAM 13022
164840	P. oryzihabitans JCM 3841, IAM 13023
164841	P. oryzihabitans JCM 3842, IAM 13024
164842	P. oryzihabitans JCM 3843, ATCC 43271, IAM 13025
164843	P. oryzihabitans JCM 3844, IAM 13026
164844	P. oryzihabitans JCM 3845, IAM 13027
164845	P. oryzihabitans JCM 3846, IAM 13028
164846	P. oryzihabitans JCM 3847, IAM 13029
174848	P. oryzihabitans 116517, DSM 116517

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
38815	negative	rod-shaped

Pigmentation

@ref	Production	Name
38815		Pyocyanin

Culture and growth conditions

Culture medium

@ref	Name	Growth	Composition	Medium link
38815	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
38815	CIP Medium 72			Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
38815	positive	growth	30
38815	positive	growth	25-37
38815	negative	growth	5
38815	negative	growth	10
38815	negative	growth	41

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
38815	NaCl	positive	growth	0-6 %
38815	NaCl		growth	8 %
38815	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
38815	16947 ChEBI	citrate	+	carbon source
38815	4853 ChEBI	esculin	-	hydrolysis
38815	17632 ChEBI	nitrate	+	reduction
38815	17632 ChEBI	nitrate	-	respiration
38815	16301 ChEBI	nitrite	-	reduction

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
38815	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
38815	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
38815	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
38815	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
38815	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
38815	caseinase	-	3.4.21.50
38815	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
38815	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
38815	gelatinase	-
38815	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
38815	lipase	-
68382	lipase (C 14)	-		from API zym
38815	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
38815	ornithine decarboxylase	-	4.1.1.17
38815	oxidase	-
38815	protease	-
68382	trypsin	+	3.4.21.4	from API zym
38815	tryptophan deaminase	-
38815	tween esterase	-
38815	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	methylglyoxal degradation	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	glycogen metabolism	100	5 of 5
66794	Entner Doudoroff pathway	100	10 of 10
66794	enterobactin biosynthesis	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	ppGpp biosynthesis	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	biotin biosynthesis	100	4 of 4
66794	ketogluconate metabolism	100	8 of 8
66794	starch degradation	100	10 of 10
66794	quinate degradation	100	2 of 2
66794	gluconeogenesis	100	8 of 8
66794	formaldehyde oxidation	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	suberin monomers biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	adipate degradation	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	NAD metabolism	94.44	17 of 18
66794	vitamin B12 metabolism	94.12	32 of 34
66794	glutamate and glutamine metabolism	92.86	26 of 28
66794	phenylalanine metabolism	92.31	12 of 13
66794	vitamin B6 metabolism	90.91	10 of 11
66794	proline metabolism	90.91	10 of 11
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	flavin biosynthesis	86.67	13 of 15
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	glutathione metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	purine metabolism	81.91	77 of 94
66794	glycine betaine biosynthesis	80	4 of 5
66794	vitamin K metabolism	80	4 of 5
66794	degradation of sugar acids	80	20 of 25
66794	peptidoglycan biosynthesis	80	12 of 15
66794	arginine metabolism	79.17	19 of 24
66794	citric acid cycle	78.57	11 of 14
66794	pyrimidine metabolism	77.78	35 of 45
66794	allantoin degradation	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	methionine metabolism	76.92	20 of 26
66794	vitamin B1 metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	histidine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	lysine metabolism	73.81	31 of 42
66794	metabolism of disaccharids	72.73	8 of 11
66794	d-xylose degradation	72.73	8 of 11
66794	oxidative phosphorylation	72.53	66 of 91
66794	alanine metabolism	72.41	21 of 29
66794	cysteine metabolism	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	tyrosine metabolism	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	octane oxidation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	sulfoquinovose degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	degradation of sugar alcohols	62.5	10 of 16
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	sulfate reduction	61.54	8 of 13
66794	lipoate biosynthesis	60	3 of 5
66794	myo-inositol biosynthesis	60	6 of 10
66794	gallate degradation	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	4-hydroxyphenylacetate degradation	60	6 of 10
66794	tryptophan metabolism	57.89	22 of 38
66794	degradation of hexoses	55.56	10 of 18
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	3-phenylpropionate degradation	53.33	8 of 15
66794	polyamine pathway	52.17	12 of 23
66794	ribulose monophosphate pathway	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	arachidonic acid metabolism	50	9 of 18
66794	cyclohexanol degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	coenzyme M biosynthesis	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	carotenoid biosynthesis	45.45	10 of 22
66794	phenol degradation	45	9 of 20
66794	nitrate assimilation	44.44	4 of 9
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	glycine metabolism	40	4 of 10
66794	3-chlorocatechol degradation	40	2 of 5
66794	factor 420 biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	sphingosine metabolism	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	toluene degradation	25	1 of 4

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
38815	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
38815	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	+	+	-	+	-	-	+	-	-	-	-	+	+	+	-	-	+	-	-	-	-	-	-	+	+	-	-	+	+	+	+	+	-	+	+	+	+	-	-	-	+	-	+	+	+	+	-	-	-	-	-	+	+	+	-	+	+	+	-	+	+	-	+	-	+	-	+	-	+	+	+	+	+	+	+	-	+	-	+

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
38815			Besançon	France	FRA	Europe
38815	Human, Blood	Homo sapiens	Besançon	France	FRA	Europe	1985

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
38815	1	Risk group (French classification)

Sequence information

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#38815	Collection of Institut Pasteur ; Curators of the CIP; CIP 101989
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68382	Automatically annotated from API zym .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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