Name: Spirosoma litoris 15J16-2T3A
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141167

Type strain:

Species: Spirosoma litoris

Strain Designation: 15J16-2T3A

Culture col. no.: KCTC 52029, JCM 31999

Strain history: <- Myung Kyum, Kim, Seoul Womens Univ.

NCBI tax ID(s): 1968281 (species)

Section

Spirosoma litoris 15J16-2T3A is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from beach soil sample.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Spirosoma*
	Species	**Spirosoma litoris**
	Full Scientific Name (LPSN)	Spirosoma litoris Okiria et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #44086]	Gram stain	negative

[Ref.: #44086]	Cell length	1.1-6.5 µm

[Ref.: #44086]	Cell width	0.8-1.0 µm

[Ref.: #44086]	Cell shape	rod-shaped

[Ref.: #44086]	Motility	no

[Ref.: #44086]	Colony color	pale yellow
[Ref.: #44086]	Colony shape	circular
[Ref.: #44086]	Incubation period	3 days
[Ref.: #44086]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44086]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #44086]

Culture medium growth

		Temperature
[Ref.: #44086]	growth	10-37 °C
[Ref.: #44086]	optimum	25 °C
[Ref.: #67770]	growth	25 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #44086]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #44086]			optimum	7
[Ref.: #44086]			growth	6.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44086]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #44086]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44086]		NaCl		growth	0-1	%(w/v)
[Ref.: #44086]		NaCl	no	growth	2	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44086]	2-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #44086]	3-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #44086]	3-hydroxybutyrate ChEBI	-	assimilation
[Ref.: #44086]	4-hydroxybenzoate ChEBI	-	assimilation
[Ref.: #44086]	5-dehydro-D-gluconate ChEBI	-	assimilation
[Ref.: #44086]	acetate ChEBI	-	assimilation
[Ref.: #44086]	adipate ChEBI	-	assimilation
[Ref.: #44086]	amygdalin ChEBI	+/-	builds acid from
[Ref.: #44086]	arbutin ChEBI	+	builds acid from
[Ref.: #44086]	cellobiose ChEBI	+	builds acid from
[Ref.: #44086]	citrate ChEBI	-	assimilation
[Ref.: #44086]	D-arabinose ChEBI	+/-	builds acid from
[Ref.: #44086]	D-arabitol ChEBI	-	builds acid from
[Ref.: #44086]	D-fructose ChEBI	+	builds acid from
[Ref.: #44086]	D-fucose ChEBI	+/-	builds acid from
[Ref.: #44086]	D-galactose ChEBI	+	builds acid from
[Ref.: #44086]	D-glucose ChEBI	-	builds acid from
[Ref.: #44086]	D-glucose ChEBI	+	assimilation
[Ref.: #44086]	D-lyxose ChEBI	+	builds acid from
[Ref.: #44086]	D-mannitol ChEBI	-	assimilation
[Ref.: #44086]	D-mannitol ChEBI	-	builds acid from
[Ref.: #44086]	D-mannose ChEBI	+	assimilation
[Ref.: #44086]	D-mannose ChEBI	+	builds acid from
[Ref.: #44086]	D-ribose ChEBI	-	assimilation
[Ref.: #44086]	D-ribose ChEBI	+/-	builds acid from
[Ref.: #44086]	D-sorbitol ChEBI	-	assimilation
[Ref.: #44086]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #44086]	D-tagatose ChEBI	+/-	builds acid from
[Ref.: #44086]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #44086]	decanoate ChEBI	-	assimilation
[Ref.: #44086]	erythritol ChEBI	-	builds acid from
[Ref.: #44086]	esculin ChEBI	+	hydrolysis
[Ref.: #44086]	esculin ferric citrate	+	builds acid from
[Ref.: #44086]	galactitol ChEBI	-	builds acid from
[Ref.: #44086]	gelatin ChEBI	-	hydrolysis
[Ref.: #44086]	gentiobiose ChEBI	+	builds acid from
[Ref.: #44086]	gluconate ChEBI	-	assimilation
[Ref.: #44086]	glucose ChEBI	+	fermentation
[Ref.: #44086]	glycerol ChEBI	-	builds acid from
[Ref.: #44086]	glycogen ChEBI	-	assimilation
[Ref.: #44086]	glycogen ChEBI	+/-	builds acid from
[Ref.: #44086]	inulin ChEBI	+/-	builds acid from
[Ref.: #44086]	itaconate ChEBI	-	assimilation
[Ref.: #44086]	L-alanine ChEBI	-	assimilation
[Ref.: #44086]	L-arabinose ChEBI	-	assimilation
[Ref.: #44086]	L-arabinose ChEBI	+	builds acid from
[Ref.: #44086]	L-arabitol ChEBI	-	builds acid from
[Ref.: #44086]	L-fucose ChEBI	-	assimilation
[Ref.: #44086]	L-fucose ChEBI	+/-	builds acid from
[Ref.: #44086]	L-histidine ChEBI	+/-	assimilation
[Ref.: #44086]	L-malate ChEBI	-	assimilation
[Ref.: #44086]	L-proline ChEBI	-	assimilation
[Ref.: #44086]	L-rhamnose ChEBI	+	assimilation
[Ref.: #44086]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #44086]	L-serine ChEBI	-	assimilation
[Ref.: #44086]	L-sorbose ChEBI	+/-	builds acid from
[Ref.: #44086]	L-xylose ChEBI	+/-	builds acid from
[Ref.: #44086]	lactate ChEBI	-	assimilation
[Ref.: #44086]	lactose ChEBI	+	builds acid from
[Ref.: #44086]	malonate ChEBI	-	assimilation
[Ref.: #44086]	maltose ChEBI	+	assimilation
[Ref.: #44086]	maltose ChEBI	+	builds acid from
[Ref.: #44086]	melezitose ChEBI	+	builds acid from
[Ref.: #44086]	melibiose ChEBI	+	assimilation
[Ref.: #44086]	melibiose ChEBI	+	builds acid from
[Ref.: #44086]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #44086]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #44086]	methyl beta-D-xylopyranoside ChEBI	+/-	builds acid from
[Ref.: #44086]	myo-inositol ChEBI	-	assimilation
[Ref.: #44086]	myo-inositol ChEBI	-	builds acid from
[Ref.: #44086]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #44086]	N-acetylglucosamine ChEBI	+/-	builds acid from
[Ref.: #44086]	nitrate ChEBI	-	reduction
[Ref.: #44086]	phenylacetate ChEBI	-	assimilation
[Ref.: #44086]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #44086]	potassium 5-dehydro-D-gluconate	+/-	builds acid from
[Ref.: #44086]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #44086]	propionate ChEBI	-	assimilation
[Ref.: #44086]	raffinose ChEBI	+	builds acid from
[Ref.: #44086]	ribitol ChEBI	-	builds acid from
[Ref.: #44086]	salicin ChEBI	+	assimilation
[Ref.: #44086]	salicin ChEBI	+	builds acid from
[Ref.: #44086]	starch ChEBI	+	builds acid from
[Ref.: #44086]	suberic acid ChEBI	-	assimilation
[Ref.: #44086]	sucrose ChEBI	+	assimilation
[Ref.: #44086]	sucrose ChEBI	+	builds acid from
[Ref.: #44086]	trehalose ChEBI	+	builds acid from
[Ref.: #44086]	turanose ChEBI	+	builds acid from
[Ref.: #44086]	urea ChEBI	-	hydrolysis
[Ref.: #44086]	valerate ChEBI	-	assimilation
[Ref.: #44086]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #44086]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44086]	acid phosphatase	+	3.1.3.2
[Ref.: #44086]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44086]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #44086]	alpha-fucosidase	-	3.2.1.51
[Ref.: #44086]	alpha-galactosidase	+	3.2.1.22
[Ref.: #44086]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44086]	alpha-mannosidase	+	3.2.1.24
[Ref.: #44086]	arginine dihydrolase	-	3.5.3.6
[Ref.: #44086]	beta-galactosidase	+	3.2.1.23
[Ref.: #44086]	beta-glucosidase	+	3.2.1.21
[Ref.: #44086]	beta-glucuronidase	+	3.2.1.31
[Ref.: #44086]	catalase	+	1.11.1.6
[Ref.: #44086]	cystine arylamidase	-	3.4.11.3
[Ref.: #44086]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44086]	esterase (C 4)	-
[Ref.: #44086]	esterase Lipase (C 8)	-
[Ref.: #44086]	leucine arylamidase	+	3.4.11.1
[Ref.: #44086]	lipase (C 14)	-
[Ref.: #44086]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #44086]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44086]	trypsin	-	3.4.21.4
[Ref.: #44086]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44086]

Fatty acid	Percentage
C16:1ω6c / C16:1ω7c	35.5
C16:1ω5c	26.6
C15:0 iso	10.1
C16:0 N alcohol	5.9
C16:0	5.7
C18:0	4.6
C17:0 iso 3OH	3.8
C15:0 iso 3OH	2.2
C16:0 3OH	1
C14:0	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44086]	Sample type/isolated from	beach soil sample
[Ref.: #44086]	Geographic location (country and/or sea, region)	Jeju Island
[Ref.: #44086]	Country	Republic of Korea
[Ref.: #44086]	Country ISO 3 Code	KOR
[Ref.: #44086]	Continent	Asia
[Ref.: #44086]	Enrichment culture	R2A
[Ref.: #44086]	Enrichment culture duration	7 days
[Ref.: #44086]	Enrichment culture temperature	25 ̊C

[Ref.: #67770]	Sample type/isolated from	Beach soil on Jeju Island
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil(Around the Jeju Airport
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju Island)
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Coast
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC221823 (>99% sequence identity) for Spirosoma litoris subclade from Microbeatlas

Aquatic Samples	233
Soil Samples	460
Animal Samples	421
Plant Samples	437
Total Samples	1551

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44086]	16S rRNA gene sequence	LC221823		GenBank

[Ref.: #67770]

GC-content

47.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #44086]

Culture collection no.

KCTC 52029, JCM 31999

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma litoris sp. nov., a bacterium isolated from beach soil.	Okiria J, Ten LN, Lee JJ, Lee SY, Cho YJ, Kim MK, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002394	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44086

Joseph Okiria, Leonid N. Ten, Jae-Jin Lee, Seung-Yeol Lee, Young-Je Cho, Myung Kyum Kim and Hee-Young Jung: Spirosoma litoris sp. nov., a bacterium isolated from beach soil. IJSEM 67: 4986 - 4991 2017 ( DOI 10.1099/ijsem.0.002394 , PubMed 29058659 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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