Name: Undibacterium amnicola KYPY9
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141168

Type strain:

Species: Undibacterium amnicola

Strain Designation: KYPY9

Culture col. no.: BCRC 81009, LMG 29730 KCTC 52442

NCBI tax ID(s): 1834038 (species)

Special Collections

Section

Undibacterium amnicola KYPY9 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from freshwater stream.

colony-forming
Gram-negative
motile
rod-shaped
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Undibacterium*
	Species	**Undibacterium amnicola**
	Full Scientific Name (LPSN)	Undibacterium amnicola Chen et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #44088]	Gram stain	negative

[Ref.: #44088]	Cell length	1.6-2.0 µm

[Ref.: #44088]	Cell width	0.6-0.8 µm

[Ref.: #44088]	Cell shape	rod-shaped

[Ref.: #44088]	Motility	yes

[Ref.: #44088]	Colony size	1.0-2.0 mm
[Ref.: #44088]	Colony color	light yellow
[Ref.: #44088]	Colony shape	circular
[Ref.: #44088]	Incubation period	2 days
[Ref.: #44088]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

trypticase soy agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #44088]			growth	10-30 °C
[Ref.: #44088]			optimum	20-25 °C

	pH	Kind of pH		pH
[Ref.: #44088]			optimum	7
[Ref.: #44088]			growth	6.5-7.5

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

obligate aerobe

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Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44088]		NaCl		growth	0-0.6	%
[Ref.: #44088]		NaCl		optimum	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44088]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #44088]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #44088]	adipate ChEBI	-	assimilation
[Ref.: #44088]	alginate ChEBI	-	hydrolysis
[Ref.: #44088]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #44088]	amygdalin ChEBI	-	builds acid from
[Ref.: #44088]	arabinose ChEBI	-	assimilation
[Ref.: #44088]	arbutin ChEBI	-	builds acid from
[Ref.: #44088]	bromosuccinate ChEBI	+	carbon source
[Ref.: #44088]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #44088]	casein	+	hydrolysis
[Ref.: #44088]	cellobiose ChEBI	+	builds acid from
[Ref.: #44088]	chitin ChEBI	-	hydrolysis
[Ref.: #44088]	citrate ChEBI	-	assimilation
[Ref.: #44088]	D-arabinose ChEBI	-	builds acid from
[Ref.: #44088]	D-arabitol ChEBI	-	builds acid from
[Ref.: #44088]	D-fructose ChEBI	-	builds acid from
[Ref.: #44088]	D-fucose ChEBI	-	builds acid from
[Ref.: #44088]	D-galactose ChEBI	-	builds acid from
[Ref.: #44088]	D-galactose ChEBI	+	carbon source
[Ref.: #44088]	D-glucose ChEBI	+	builds acid from
[Ref.: #44088]	D-lyxose ChEBI	-	builds acid from
[Ref.: #44088]	D-mannitol ChEBI	-	builds acid from
[Ref.: #44088]	D-mannose ChEBI	-	builds acid from
[Ref.: #44088]	D-ribose ChEBI	-	builds acid from
[Ref.: #44088]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #44088]	D-tagatose ChEBI	-	builds acid from
[Ref.: #44088]	D-xylose ChEBI	-	builds acid from
[Ref.: #44088]	decanoate ChEBI	-	assimilation
[Ref.: #44088]	dextrin ChEBI	+	carbon source
[Ref.: #44088]	dna ChEBI	+	hydrolysis
[Ref.: #44088]	erythritol ChEBI	-	builds acid from
[Ref.: #44088]	esculin ChEBI	+	hydrolysis
[Ref.: #44088]	esculin ferric citrate	+	builds acid from
[Ref.: #44088]	galactitol ChEBI	-	builds acid from
[Ref.: #44088]	gelatin ChEBI	+	hydrolysis
[Ref.: #44088]	gentiobiose ChEBI	+	builds acid from
[Ref.: #44088]	gentiobiose ChEBI	+	carbon source
[Ref.: #44088]	gluconate ChEBI	-	assimilation
[Ref.: #44088]	glucose ChEBI	-	assimilation
[Ref.: #44088]	glycerol ChEBI	-	builds acid from
[Ref.: #44088]	glycogen ChEBI	-	builds acid from
[Ref.: #44088]	glycyl L-aspartic acid ChEBI	+	carbon source
[Ref.: #44088]	glycyl-l-glutamate ChEBI	+	carbon source
[Ref.: #44088]	inulin ChEBI	-	builds acid from
[Ref.: #44088]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #44088]	L-arabinose ChEBI	-	builds acid from
[Ref.: #44088]	L-arabinose ChEBI	+	carbon source
[Ref.: #44088]	L-arabitol ChEBI	-	builds acid from
[Ref.: #44088]	L-asparagine ChEBI	+	carbon source
[Ref.: #44088]	L-fucose ChEBI	-	builds acid from
[Ref.: #44088]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #44088]	L-serine ChEBI	+	carbon source
[Ref.: #44088]	L-sorbose ChEBI	-	builds acid from
[Ref.: #44088]	L-xylose ChEBI	-	builds acid from
[Ref.: #44088]	lactose ChEBI	+	builds acid from
[Ref.: #44088]	lecithin ChEBI	-	hydrolysis
[Ref.: #44088]	malate ChEBI	-	assimilation
[Ref.: #44088]	maltose ChEBI	-	assimilation
[Ref.: #44088]	maltose ChEBI	+	builds acid from
[Ref.: #44088]	maltose ChEBI	+	carbon source
[Ref.: #44088]	mannitol ChEBI	-	assimilation
[Ref.: #44088]	mannose ChEBI	-	assimilation
[Ref.: #44088]	melezitose ChEBI	-	builds acid from
[Ref.: #44088]	melibiose ChEBI	-	builds acid from
[Ref.: #44088]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #44088]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #44088]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #44088]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #44088]	myo-inositol ChEBI	-	builds acid from
[Ref.: #44088]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #44088]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #44088]	nitrate ChEBI	+	reduction
[Ref.: #44088]	phenylacetate ChEBI	-	assimilation
[Ref.: #44088]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #44088]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #44088]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #44088]	raffinose ChEBI	-	builds acid from
[Ref.: #44088]	ribitol ChEBI	-	builds acid from
[Ref.: #44088]	salicin ChEBI	-	builds acid from
[Ref.: #44088]	starch ChEBI	+	builds acid from
[Ref.: #44088]	starch ChEBI	+	hydrolysis
[Ref.: #44088]	sucrose ChEBI	+	builds acid from
[Ref.: #44088]	trehalose ChEBI	-	builds acid from
[Ref.: #44088]	turanose ChEBI	-	builds acid from
[Ref.: #44088]	tween 20 ChEBI	+	hydrolysis
[Ref.: #44088]	tween 40 ChEBI	+	carbon source
[Ref.: #44088]	tween 40 ChEBI	+	hydrolysis
[Ref.: #44088]	tween 60 ChEBI	+	hydrolysis
[Ref.: #44088]	tween 80 ChEBI	+	carbon source
[Ref.: #44088]	tween 80 ChEBI	+	hydrolysis
[Ref.: #44088]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #44088]	ampicillin ChEBI	yes	10	µg (disc)
[Ref.: #44088]	chloramphenicol ChEBI	yes	30	µg (disc)
[Ref.: #44088]	gentamicin ChEBI	yes	10	µg (disc)
[Ref.: #44088]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #44088]	nalidixic acid ChEBI	yes	30	µg (disc)
[Ref.: #44088]	novobiocin ChEBI	yes	30	µg (disc)
[Ref.: #44088]	penicillin g ChEBI	yes	10	Unit (disc)
[Ref.: #44088]	rifampicin ChEBI	yes	5	µg (disc)
[Ref.: #44088]	streptomycin ChEBI	yes	10	µg (disc)
[Ref.: #44088]	tetracycline ChEBI	yes	30	µg (disc)

	Antibiotica	Group ID of combined antibiotics	Metabolite	Antibiotic sensitivity	Concentration
[Ref.: #44088]		26	sulfamethoxazole ChEBI	yes	23.75	µg (disc)
[Ref.: #44088]		26	trimethoprim ChEBI	yes	1.25	µg (disc)

	Metabolite production	Metabolite	Production
[Ref.: #44088]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44088]	acid phosphatase	+	3.1.3.2
[Ref.: #44088]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44088]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44088]	alpha-fucosidase	-	3.2.1.51
[Ref.: #44088]	alpha-galactosidase	+	3.2.1.22
[Ref.: #44088]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44088]	alpha-mannosidase	-	3.2.1.24
[Ref.: #44088]	arginine dihydrolase	-	3.5.3.6
[Ref.: #44088]	beta-galactosidase	+	3.2.1.23
[Ref.: #44088]	beta-glucosidase	-	3.2.1.21
[Ref.: #44088]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44088]	catalase	-	1.11.1.6
[Ref.: #44088]	cystine arylamidase	+	3.4.11.3
[Ref.: #44088]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44088]	esterase (C 4)	+
[Ref.: #44088]	esterase Lipase (C 8)	+
[Ref.: #44088]	leucine arylamidase	+	3.4.11.1
[Ref.: #44088]	lipase	-
[Ref.: #44088]	lipase (C 14)	-
[Ref.: #44088]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #44088]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44088]	trypsin	-	3.4.21.4
[Ref.: #44088]	urease	-	3.5.1.5
[Ref.: #44088]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44088]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	54.7
C16:0	29
C10:0 3OH	6.1
C18:1ω7c	4.7
C12:0	3.7
C8:0 3OH	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44088]	Sample type/isolated from	freshwater stream
[Ref.: #44088]	Geographic location (country and/or sea, region)	Funglin Stream, Hualien County
[Ref.: #44088]	Country	Taiwan, Province of China
[Ref.: #44088]	Country ISO 3 Code	TWN
[Ref.: #44088]	Continent	Asia
[Ref.: #44088]	Geographic location	23.7594°/121.4470°
[Ref.: #44088]	Enrichment culture	R2A
[Ref.: #44088]	Enrichment culture duration	3 days
[Ref.: #44088]	Enrichment culture temperature	25 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LT555406 (>99% sequence identity) for Undibacterium from Microbeatlas

Aquatic Samples	215
Soil Samples	58
Animal Samples	24
Plant Samples	11
Total Samples	308

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44088]	Undibacterium sp. KYPY9 partial 16S rRNA gene, strain KYPY9	LT555406		GenBank ENA

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GC-content

47.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

BCRC 81009, LMG 29730 KCTC 52442

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Undibacterium amnicola sp. nov., isolated from a freshwater stream.	Chen WM, Hsieh TY, Young CC, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002422	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44088

Wen-Ming Chen, Tsai-Ying Hsieh, Chiu-Chung Young and Shih-Yi Sheu: Undibacterium amnicola sp. nov., isolated from a freshwater stream. IJSEM 67: 5094 - 5101 2017 ( DOI 10.1099/ijsem.0.002422 , PubMed 29058644 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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