Name: Oceaniglobus indicus 1-19b
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141105

Type strain:

Species: Oceaniglobus indicus

Strain Designation: 1-19b

Culture col. no.: MCCC 1A11863, KCTC 52709

NCBI tax ID(s): 2047749 (species)

Section

Oceaniglobus indicus 1-19b is an aerobe, Gram-negative, ovoid-shaped bacterium that forms circular colonies and was isolated from surface seawater.

colony-forming
Gram-negative
ovoid-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Roseobacteraceae*
	Genus	*Oceaniglobus*
	Species	**Oceaniglobus indicus**
	Full Scientific Name (LPSN)	Oceaniglobus indicus Li et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #44013]	Gram stain	negative

[Ref.: #44013]	Cell shape	ovoid-shaped
[Ref.: #44013]	Cell shape	coccus-shaped

[Ref.: #44013]	Motility	no

[Ref.: #44013]	Cell length	0.8-1.0 µm

[Ref.: #44013]	Colony size	0.8-1.0 mm
[Ref.: #44013]	Colony color	creamy
[Ref.: #44013]	Colony shape	circular
[Ref.: #44013]	Incubation period	2 days
[Ref.: #44013]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44013]

Culture medium

Marine agar (MA)

[Ref.: #44013]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #44013]			growth	5-37 °C
[Ref.: #44013]			optimum	28-35 °C

[Ref.: #44013]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #44013]			optimum	7.0-8.0
[Ref.: #44013]			growth	5.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44013]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44013]		NaCl		growth	0.5-10	%
[Ref.: #44013]		NaCl		optimum	3-4	%

[Ref.: #44013]

Observation

predominant respiratory quinone is ubiquinone 10 (Q-10)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44013]	adipate ChEBI	-	assimilation
[Ref.: #44013]	amygdalin ChEBI	-	builds acid from
[Ref.: #44013]	arabinose ChEBI	-	builds acid from
[Ref.: #44013]	arginine ChEBI	-	assimilation
[Ref.: #44013]	casein	-	hydrolysis
[Ref.: #44013]	D-glucose ChEBI	-	assimilation
[Ref.: #44013]	D-mannitol ChEBI	+	assimilation
[Ref.: #44013]	D-mannose ChEBI	-	assimilation
[Ref.: #44013]	decanoate ChEBI	-	assimilation
[Ref.: #44013]	esculin ChEBI	+	hydrolysis
[Ref.: #44013]	gelatin ChEBI	-	hydrolysis
[Ref.: #44013]	glucose ChEBI	-	builds acid from
[Ref.: #44013]	L-arabinose ChEBI	-	assimilation
[Ref.: #44013]	malate ChEBI	+	assimilation
[Ref.: #44013]	maltose ChEBI	-	assimilation
[Ref.: #44013]	mannitol ChEBI	-	builds acid from
[Ref.: #44013]	melibiose ChEBI	-	builds acid from
[Ref.: #44013]	myo-inositol ChEBI	-	builds acid from
[Ref.: #44013]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #44013]	nitrate ChEBI	+	reduction
[Ref.: #44013]	phenylacetate ChEBI	-	assimilation
[Ref.: #44013]	potassium gluconate ChEBI	-	assimilation
[Ref.: #44013]	rhamnose ChEBI	-	builds acid from
[Ref.: #44013]	sodium citrate ChEBI	-	assimilation
[Ref.: #44013]	sorbitol ChEBI	-	builds acid from
[Ref.: #44013]	starch ChEBI	-	hydrolysis
[Ref.: #44013]	sucrose ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #44013]		indole ChEBI	no
[Ref.: #44013]		sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44013]	acid phosphatase	+	3.1.3.2
[Ref.: #44013]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44013]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #44013]	alpha-galactosidase	-	3.2.1.22
[Ref.: #44013]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44013]	alpha-mannosidase	-	3.2.1.24
[Ref.: #44013]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #44013]	beta-galactosidase	-	3.2.1.23
[Ref.: #44013]	beta-glucosidase	+	3.2.1.21
[Ref.: #44013]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44013]	catalase	+	1.11.1.6
[Ref.: #44013]	cystine arylamidase	+	3.4.11.3
[Ref.: #44013]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44013]	esterase (C 4)	+
[Ref.: #44013]	esterase Lipase (C 8)
[Ref.: #44013]	leucine arylamidase	+	3.4.11.1
[Ref.: #44013]	lipase (C 14)	-
[Ref.: #44013]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #44013]	trypsin	-	3.4.21.4
[Ref.: #44013]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44013]

Fatty acid	Percentage
C18:1ω7c and/or C18:1ω6c	69.2
C19:0 cyclo ω8c	13.8
C10:0 3OH	4.2
C16:0	3.9
11-methyl C18:1ω7c	2.5
unknown 18.846 and/or C19:1ω6c	1.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44013]	Sample type/isolated from	surface seawater
[Ref.: #44013]	Geographic location (country and/or sea, region)	Indian Ocean
[Ref.: #44013]	Country	Indian Ocean
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY694373 (>99% sequence identity) for Oceaniglobus indicus subclade from Microbeatlas

Aquatic Samples	31
Soil Samples	12
Animal Samples	51
Plant Samples	1
Total Samples	95

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44013]	16S rRNA sequence	KY694373		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oceaniglobus indicus 1-19b	GCA_002751875	contig	GenBank	2047749 tax ID	*
[Ref.: #66792]	Oceaniglobus indicus 1-19b	2788500143	draft	JGI IMG/M	2047749 tax ID	*

[Ref.: #44013]

GC-content

64.2 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #44013]

Culture collection no.

MCCC 1A11863, KCTC 52709

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceaniglobus indicus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from surface seawater.	Li J, Huang Z, Lai Q, Liu X, Wang G, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002275	2017	*
Phylogeny	Oceaniglobus trochenteri sp. nov., isolated from the gut microflora of top shell (Trochus maculatus Linnaeus).	Chen Z, Yun ST, Zhang MJ, Rui Yin, Zhou YX	Arch Microbiol	10.1007/s00203-021-02543-9	2021	*
Phylogeny	Oceaniglobus ichthyenteri sp. nov., isolated from the gut microflora of sea bass (Dicentrarchus labrax L.) and emended description of the genus Oceaniglobus.	Wang NN, Zhou LY, Wang XP, Li YX, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003573	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44013

Jianyang Li, Zhaobin Huang, Qiliang Lai, Xiupian Liu, Guangyi Wang, Zongze Shao: Oceaniglobus indicus gen. nov., sp. nov., a member of the family Rhodobacteraceae isolated from surface seawater. IJSEM 67: 4930 - 4935 2017 ( DOI 10.1099/ijsem.0.002275 , PubMed 29043958 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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