Name: Paraferrimonas haliotis AFRC7-2-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141106

Type strain:

Species: Paraferrimonas haliotis

Strain Designation: AFRC7-2-1

Culture col. no.: MCCC 1A11748, KCTC 52632, NBRC 112785

Strain history: <- Zhaobin Huang, Third institute of Oceanography, State Oceanic Administration(SOA), China

NCBI tax ID(s): 2013866 (species)

Section

Paraferrimonas haliotis AFRC7-2-1 is a facultative anaerobe bacterium that forms circular colonies and was isolated from the intestine of abalone, H. discus hannai.

colony-forming
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Ferrimonadaceae*
	Genus	*Paraferrimonas*
	Species	**Paraferrimonas haliotis**
	Full Scientific Name (LPSN)	Paraferrimonas haliotis Huang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

[Ref.: #44014]	Motility	no

[Ref.: #44014]	Colony size	1-2 mm
[Ref.: #44014]	Colony color	rose
[Ref.: #44014]	Colony shape	circular
[Ref.: #44014]	Cultivation medium used	marine agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44014]

Culture medium

Marine agar (MA)

[Ref.: #44014]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #44014]		growth	15-37 °C
[Ref.: #44014]		optimum	28 °C
[Ref.: #44014]	no	growth	45 °C
[Ref.: #67771]		growth	28 °C

[Ref.: #44014]	Temperature range	mesophilic
[Ref.: #44014]	Temperature range	thermophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #44014]			optimum	7.0-8.0
[Ref.: #44014]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44014]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44014]		NaCl		growth	0.5-6	%
[Ref.: #44014]		NaCl		optimum	3-4	%

[Ref.: #44014]

Observation

major quinones are Q-8, MK-7, MK-6, and Q7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44014]	4-nitrophenyl beta-D-galactopyranoside ChEBI	+	assimilation
[Ref.: #44014]	adipate ChEBI	-	growth
[Ref.: #44014]	amygdalin ChEBI	-	fermentation
[Ref.: #44014]	arabinose ChEBI	-	fermentation
[Ref.: #44014]	D-glucose ChEBI	-	growth
[Ref.: #44014]	D-mannitol ChEBI	-	growth
[Ref.: #44014]	D-mannose ChEBI	-	growth
[Ref.: #44014]	decanoate ChEBI	-	growth
[Ref.: #44014]	esculin ChEBI	+	assimilation
[Ref.: #44014]	ferric iron ChEBI	+	reduction
[Ref.: #44014]	gelatin ChEBI	-	assimilation
[Ref.: #44014]	glucose ChEBI	-	fermentation
[Ref.: #44014]	L-arabinose ChEBI	-	growth
[Ref.: #44014]	malate ChEBI	-	growth
[Ref.: #44014]	maltose ChEBI	-	growth
[Ref.: #44014]	mannitol ChEBI	-	fermentation
[Ref.: #44014]	melibiose ChEBI	-	fermentation
[Ref.: #44014]	myo-inositol ChEBI	-	fermentation
[Ref.: #44014]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #44014]	nitrite ChEBI	+	reduction
[Ref.: #44014]	phenylacetate ChEBI	-	growth
[Ref.: #44014]	potassium gluconate ChEBI	-	growth
[Ref.: #44014]	rhamnose ChEBI	-	fermentation
[Ref.: #44014]	sodium citrate ChEBI	-	growth
[Ref.: #44014]	sorbitol ChEBI	-	fermentation
[Ref.: #44014]	sucrose ChEBI	-	fermentation
[Ref.: #44014]	urea ChEBI	-	assimilation
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #44014]		sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #44014]	acid phosphatase	+	3.1.3.2
[Ref.: #44014]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44014]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #44014]	alpha-galactosidase	-	3.2.1.22
[Ref.: #44014]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44014]	alpha-mannosidase	-	3.2.1.24
[Ref.: #44014]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #44014]	beta-glucosidase	-	3.2.1.21
[Ref.: #44014]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44014]	catalase	+	1.11.1.6
[Ref.: #44014]	cystine arylamidase	+	3.4.11.3
[Ref.: #44014]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44014]	esterase (C 4)	+
[Ref.: #44014]	esterase Lipase (C 8)	+
[Ref.: #44014]	leucine arylamidase	+	3.4.11.1
[Ref.: #44014]	lipase (C 14)	-
[Ref.: #44014]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #44014]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44014]	trypsin	+	3.4.21.4
[Ref.: #44014]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44014]

Fatty acid	Percentage
C16:1ω7c and/or C16:1ω6c	22.7
C15:0 iso	22
C14:0	9.9
C13:0 iso	8.7
C17:1ω8c	5.4
C16:0	5.3
C13:0	4.7
C12:0	2.5
C16:1ω9c	1.9
C15:1ω6c	1.9
isoF-15:1	1.7
C14:0 iso	1.5
C12:0 3OH	1.5
C15:0 anteiso	1.3
C18:1ω9c	1.2
C15:1ω8c	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #44014]	Sample type/isolated from	the intestine of abalone, H. discus hannai

[Ref.: #67771]	Sample type/isolated from	From intestine of abalone
[Ref.: #67771]	Geographic location (country and/or sea, region)	Haliotis discus hannai collected from the raft
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY400201 (>99% sequence identity) for Paraferrimonas haliotis subclade from Microbeatlas

Aquatic Samples	103
Soil Samples	1
Animal Samples	77
Plant Samples
Total Samples	181

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #44014]	16S rRNA gene sequence	KY400201		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67771]	Paraferrimonas haliotis AFRC7-2-1	GCA_002282895	contig	GenBank	2013866 tax ID
[Ref.: #66792]	Paraferrimonas haliotis AFRC7-2-1	2831996763	draft	JGI IMG/M	2013866 tax ID	*

[Ref.: #44014]

GC-content

47.2 mol%

sequence analysis

Availability in culture collections External links

[Ref.: #44014]

Culture collection no.

MCCC 1A11748, KCTC 52632, NBRC 112785

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paraferrimonas haliotis sp. nov., isolated from the intestine of abalone, Haliotis discus hannai and emendation of description of the genus Paraferrimonas.	Huang J, Huang Z, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002414	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#44014

Jingran Huang, Zhaobin Huang, Zongze Shao: Paraferrimonas haliotis sp. nov., isolated from the intestine of abalone, Haliotis discus hannai and emendation of description of the genus Paraferrimonas. IJSEM 67: 5062 - 5066 2017 ( DOI 10.1099/ijsem.0.002414 , PubMed 29039303 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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