Flavobacterium tistrianum (TISTR 1612, KCTC 42679, GB 56.1)

Name: Flavobacterium tistrianum (TISTR 1612, KCTC 42679, GB 56.1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141070

Type strain

Strain Designation GB 56.1

Culture col. no. TISTR 1612 KCTC 42679 GB 56.1

NCBI tax ID(s) 1685414

Special Collections KCTC Literature strains

Links

Flavobacterium tistrianum GB 56.1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from soil at the Sakaerat Biosphere Reserve, in Nakhon Ratchasima province, north-eastern Thailand.

Gram-negative motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 27273

KCTC 42679

@ref 20215

Last LPSN update 2026-02-09 11:33:48

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium tistrianum

Full scientific name Flavobacterium tistrianum Suwannachart et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43956	negative	1.0-3.0 µm	0.3-0.8 µm	rod-shaped	gliding
125438						91
125438	negative					97.727

Colony morphology

@ref	Colony color	Colony shape	Medium used
43956	yellow	circular	Trypticase soy agar
43956	yellow	circular	Luria-Bertani agar
43956	yellow	circular	Yeast extract malt extract agar
43956	yellow	circular	Tryptone yeast extract agar
43956	yellow	circular	Nutrient agar
43956	yellow	circular	Charcoal yeast extract agar

Culture and growth conditions

Culture medium

@ref	Name	Composition
43956	Charcoal yeast extract agar
43956	LB (Luria-Bertani) MEDIUM
43956	Nutrient agar (NA)
43956	Trypticase soy agar
43956	Tryptone yeast extract agar	3 g/L tryptone, 5 g/L yeast extract, 5 g/L glucose, 15 g/L agar, pH 7.0
43956	Yeast extract malt extract agar (ISP 2 agar)

Culture temp

@ref	Growth	Type	Temperature (°C)
43956	positive	growth	15-30
43956	positive	optimum	25-30

Culture pH

@ref	Ability	Type	PH
43956	positive	optimum	6.0-7.0
43956	positive	growth	6.0-8.0

Physiology and metabolism

Oxygen tolerance

43956

Oxygen toleranceaerobe

Spore formation

43956

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43956	NaCl	positive	growth	0-2 %(w/v)
43956	NaCl	positive	optimum	0-1 %(w/v)

Observation

43956

Observationquinione MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43956	30089 ChEBI	acetate	+	carbon source
43956	40585 ChEBI	alpha-cyclodextrin	+	carbon source
43956	17925 ChEBI	alpha-D-glucose	+	carbon source
43956	27613 ChEBI	amygdalin	+/-	builds acid from
43956	17057 ChEBI	cellobiose	+	builds acid from
43956	15824 ChEBI	D-fructose	+	carbon source
43956	15824 ChEBI	D-fructose	+/-	builds acid from
43956	12936 ChEBI	D-galactose	+	carbon source
43956	12936 ChEBI	D-galactose	+/-	builds acid from
43956	18024 ChEBI	D-galacturonic acid	+	carbon source
43956	17634 ChEBI	D-glucose	+	builds acid from
43956	16024 ChEBI	D-mannose	+	carbon source
43956	65327 ChEBI	D-xylose	+/-	builds acid from
43956	23652 ChEBI	dextrin	+	carbon source
43956		esculin ferric citrate	+	builds acid from
43956	28066 ChEBI	gentiobiose	+	builds acid from
43956	28066 ChEBI	gentiobiose	+	carbon source
43956	28087 ChEBI	glycogen	+	builds acid from
43956	28087 ChEBI	glycogen	+	carbon source
43956	73784 ChEBI	glycyl-l-glutamate	+	carbon source
43956	16977 ChEBI	L-alanine	+	carbon source
43956	73786 ChEBI	L-alanylglycine	+	carbon source
43956	30849 ChEBI	L-arabinose	+/-	builds acid from
43956	17196 ChEBI	L-asparagine	+	carbon source
43956	29991 ChEBI	L-aspartate	+	carbon source
43956	18287 ChEBI	L-fucose	+	carbon source
43956	29985 ChEBI	L-glutamate	+	carbon source
43956	15729 ChEBI	L-ornithine	+	carbon source
43956	17716 ChEBI	lactose	+/-	builds acid from
43956	17306 ChEBI	maltose	+	builds acid from
43956	17306 ChEBI	maltose	+	carbon source
43956	37684 ChEBI	mannose	+	builds acid from
43956	28053 ChEBI	melibiose	+	builds acid from
43956	28053 ChEBI	melibiose	+	carbon source
43956	51850 ChEBI	methyl pyruvate	+	carbon source
43956	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43956	506227 ChEBI	N-acetylglucosamine	+	carbon source
43956	17632 ChEBI	nitrate	-	reduction
43956	53258 ChEBI	sodium citrate	-	carbon source
43956	28017 ChEBI	starch	+	builds acid from
43956	53423 ChEBI	tween 40	+	carbon source
43956	53426 ChEBI	tween 80	+	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite
43956	28971	ampicillin
43956	3393	carbenicillin
43956	17698	chloramphenicol
43956	48923	erythromycin
43956	17833	gentamicin
43956	6104	kanamycin
43956	6472	lincomycin
43956	100147	nalidixic acid
43956	7507	neomycin
43956	28368	novobiocin
43956	18208	penicillin g
43956	17076	streptomycin
43956	27902	tetracycline
43956	28001	vancomycin

Enzymes

@ref	Value	Activity	Ec
43956	acid phosphatase	+	3.1.3.2
43956	alkaline phosphatase	+	3.1.3.1
43956	alpha-chymotrypsin	-	3.4.21.1
43956	alpha-fucosidase	-	3.2.1.51
43956	alpha-glucosidase	+	3.2.1.20
43956	alpha-mannosidase	-	3.2.1.24
43956	beta-galactosidase	+	3.2.1.23
43956	beta-glucuronidase	-	3.2.1.31
43956	esterase (C 4)	+
43956	esterase Lipase (C 8)	+
43956	leucine arylamidase	+	3.4.11.1
43956	lipase (C 14)	-
43956	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43956	naphthol-AS-BI-phosphohydrolase	+
43956	trypsin	-	3.4.21.4
43956	urease	-	3.5.1.5
43956	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
43956	soil at the Sakaerat Biosphere Reserve, in Nakhon Ratchasima province, north-eastern Thailand	Sakaerat Biosphere Reserve, in Nakhon Ratchasima province	Thailand	THA	Asia	Tap water medium	Tap water with 1,5% agar	4-5 days	30

Taxonmaps

69479

Global distribution of 16S sequence KT223144 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	27
Soil Samples	57
Animal Samples	15
Plant Samples	2
Total Samples	101

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM325454v1 assembly for Flavobacterium tistrianum GB 56.1	contig	GCA_003254545	1685414.3	2958519378	1685414	65.07

16S sequences

@ref	Description	Accession	Database
43956	Flavobacterium tistrianum strain GB 56.1 16S ribosomal RNA gene, partial sequence	KT223144

GC content

@ref	GC-content (mol%)	Method
43956	34.2	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium tistrianum GB 56.1
NCBI: GCA_003254545.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.73	yes
125438	anaerobic	anaerobicⓘ	no	98.39	yes
125438	aerobic	aerobicⓘ	yes	87.30	yes
125438	spore-forming	spore-formingⓘ	no	85.76	no
125438	thermophilic	thermophileⓘ	no	98.92	no
125438	flagellated	motile2+ⓘ	no	91.00	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium tagetis sp. nov., a novel urea-hydrolysing bacterium isolated from the roots of Tagetes patula.	Chhetri G, Kim I, Kang M, Kim J, So Y, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004984	2021
Phylogeny	Flavobacterium zhairuonensis sp. nov., a gliding bacterium isolated from marine sediment of the East China Sea.	Debnath SC, Miyah AMA, Chen C, Sheng H, Xu XW, Wu YH, Zheng DQ, Xu JZ, Di YN, Wang PM, Shen L	J Microbiol	10.1007/s12275-019-9194-4	2019
Phylogeny	Flavobacterium effusum sp. nov., isolated from a freshwater river.	Chen WM, Su CL, Kwon SW, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002944	2018
Phylogeny	Flavobacterium tistrianum sp. nov., a gliding bacterium isolated from soil.	Suwannachart C, Rueangyotchanthana K, Srichuay S, Pheng S, Fungsin B, Phoonsiri C, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001016	2016
Phylogeny	Flavobacterium sharifuzzamanii sp. nov., Isolated from the Sediments of the East China Sea.	Debnath SC, Chen C, Liu SX, Di YN, Zheng DQ, Li XY, Xu XW, Xu JZ, Wang PM	Curr Microbiol	10.1007/s00284-018-1609-7	2019
Phylogeny	Flavobacterium foetidum sp. nov., isolated from ginseng soil.	Bu JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002553	2018

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43956	Chatrudee Suwannachart, Kanjana Rueangyotchanthana, Suksan Srichuay, Sophea Pheng, Bundit Fungsin, Chantara Phoonsiri, Song-Gun Kim: Flavobacterium tistrianum sp. nov., a gliding bacterium isolated from soil. IJSEM 66: 2241 - 2246 2016 ( DOI 10.1099/ijsem.0.001016 , PubMed 26970735 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium tistrianum (TISTR 1612, KCTC 42679, GB 56.1)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_003254545

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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