Name: Flavobacterium tistrianum GB 56.1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141070

Type strain:

Species: Flavobacterium tistrianum

Strain Designation: GB 56.1

Culture col. no.: TISTR 1612, KCTC 42679

NCBI tax ID(s): 1685414 (species)

Section

Flavobacterium tistrianum GB 56.1 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from soil at the Sakaerat Biosphere Reserve, in Nakhon Ratchasima province, north-eastern Thailand.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium tistrianum**
	Full Scientific Name (LPSN)	Flavobacterium tistrianum Suwannachart et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43956]	Gram stain	negative

[Ref.: #43956]	Cell length	1.0-3.0 µm

[Ref.: #43956]	Cell width	0.3-0.8 µm

[Ref.: #43956]	Cell shape	rod-shaped

[Ref.: #43956]	Motility	yes

[Ref.: #43956]	Flagellum arrangement	gliding

[Ref.: #43956]	Colony color	yellow
[Ref.: #43956]	Colony shape	circular
[Ref.: #43956]	Cultivation medium used	Trypticase soy agar

[Ref.: #43956]	Colony color	yellow
[Ref.: #43956]	Colony shape	circular
[Ref.: #43956]	Cultivation medium used	Luria-Bertani agar

[Ref.: #43956]	Colony color	yellow
[Ref.: #43956]	Colony shape	circular
[Ref.: #43956]	Cultivation medium used	Yeast extract malt extract agar

[Ref.: #43956]	Colony color	yellow
[Ref.: #43956]	Colony shape	circular
[Ref.: #43956]	Cultivation medium used	Tryptone yeast extract agar

[Ref.: #43956]	Colony color	yellow
[Ref.: #43956]	Colony shape	circular
[Ref.: #43956]	Cultivation medium used	Nutrient agar

[Ref.: #43956]	Colony color	yellow
[Ref.: #43956]	Colony shape	circular
[Ref.: #43956]	Cultivation medium used	Charcoal yeast extract agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Charcoal yeast extract agar

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Trypticase soy agar

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Culture medium growth

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Culture medium

Tryptone yeast extract agar

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

Yeast extract malt extract agar (ISP 2 agar)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43956]			growth	15-30 °C
[Ref.: #43956]			optimum	25-30 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43956]			optimum	6.0-7.0
[Ref.: #43956]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43956]		NaCl		growth	0-2	%(w/v)
[Ref.: #43956]		NaCl		optimum	0-1	%(w/v)

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Observation

quinione MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43956]	acetate ChEBI	+	carbon source
[Ref.: #43956]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #43956]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43956]	amygdalin ChEBI	+/-	builds acid from
[Ref.: #43956]	cellobiose ChEBI	+	builds acid from
[Ref.: #43956]	D-fructose ChEBI	+	carbon source
[Ref.: #43956]	D-fructose ChEBI	+/-	builds acid from
[Ref.: #43956]	D-galactose ChEBI	+	carbon source
[Ref.: #43956]	D-galactose ChEBI	+/-	builds acid from
[Ref.: #43956]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43956]	D-glucose ChEBI	+	builds acid from
[Ref.: #43956]	D-mannose ChEBI	+	carbon source
[Ref.: #43956]	D-xylose ChEBI	+/-	builds acid from
[Ref.: #43956]	dextrin ChEBI	+	carbon source
[Ref.: #43956]	esculin ferric citrate	+	builds acid from
[Ref.: #43956]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43956]	gentiobiose ChEBI	+	carbon source
[Ref.: #43956]	glycogen ChEBI	+	builds acid from
[Ref.: #43956]	glycogen ChEBI	+	carbon source
[Ref.: #43956]	glycyl-l-glutamate ChEBI	+	carbon source
[Ref.: #43956]	L-alanine ChEBI	+	carbon source
[Ref.: #43956]	L-alanylglycine ChEBI	+	carbon source
[Ref.: #43956]	L-arabinose ChEBI	+/-	builds acid from
[Ref.: #43956]	L-asparagine ChEBI	+	carbon source
[Ref.: #43956]	L-aspartate ChEBI	+	carbon source
[Ref.: #43956]	L-fucose ChEBI	+	carbon source
[Ref.: #43956]	L-glutamate ChEBI	+	carbon source
[Ref.: #43956]	L-ornithine ChEBI	+	carbon source
[Ref.: #43956]	lactose ChEBI	+/-	builds acid from
[Ref.: #43956]	maltose ChEBI	+	builds acid from
[Ref.: #43956]	maltose ChEBI	+	carbon source
[Ref.: #43956]	mannose ChEBI	+	builds acid from
[Ref.: #43956]	melibiose ChEBI	+	builds acid from
[Ref.: #43956]	melibiose ChEBI	+	carbon source
[Ref.: #43956]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #43956]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43956]	N-acetylglucosamine ChEBI	+	carbon source
[Ref.: #43956]	nitrate ChEBI	-	reduction
[Ref.: #43956]	sodium citrate ChEBI	-	carbon source
[Ref.: #43956]	starch ChEBI	+	builds acid from
[Ref.: #43956]	tween 40 ChEBI	+	carbon source
[Ref.: #43956]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #43956]	ampicillin ChEBI		yes
[Ref.: #43956]	carbenicillin ChEBI	yes
[Ref.: #43956]	chloramphenicol ChEBI	yes
[Ref.: #43956]	erythromycin ChEBI	yes
[Ref.: #43956]	gentamicin ChEBI		yes
[Ref.: #43956]	kanamycin ChEBI		yes
[Ref.: #43956]	lincomycin ChEBI	yes
[Ref.: #43956]	nalidixic acid ChEBI	yes
[Ref.: #43956]	neomycin ChEBI		yes
[Ref.: #43956]	novobiocin ChEBI	yes
[Ref.: #43956]	penicillin g ChEBI		yes
[Ref.: #43956]	streptomycin ChEBI		yes
[Ref.: #43956]	tetracycline ChEBI	yes
[Ref.: #43956]	vancomycin ChEBI		yes
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43956]	acid phosphatase	+	3.1.3.2
[Ref.: #43956]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43956]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43956]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43956]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43956]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43956]	beta-galactosidase	+	3.2.1.23
[Ref.: #43956]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43956]	esterase (C 4)	+
[Ref.: #43956]	esterase Lipase (C 8)	+
[Ref.: #43956]	leucine arylamidase	+	3.4.11.1
[Ref.: #43956]	lipase (C 14)	-
[Ref.: #43956]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43956]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43956]	trypsin	-	3.4.21.4
[Ref.: #43956]	urease	-	3.5.1.5
[Ref.: #43956]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43956]	Sample type/isolated from	soil at the Sakaerat Biosphere Reserve, in Nakhon Ratchasima province, north-eastern Thailand
[Ref.: #43956]	Geographic location (country and/or sea, region)	Sakaerat Biosphere Reserve, in Nakhon Ratchasima province
[Ref.: #43956]	Country	Thailand
[Ref.: #43956]	Country ISO 3 Code	THA
[Ref.: #43956]	Continent	Asia
[Ref.: #43956]	Enrichment culture	Tap water medium
[Ref.: #43956]	Enrichment culture composition	Tap water with 1,5% agar
[Ref.: #43956]	Enrichment culture duration	4-5 days
[Ref.: #43956]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT223144 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	27
Soil Samples	57
Animal Samples	15
Plant Samples	2
Total Samples	101

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43956]	16S rRNA gene sequence	KT223144		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium tistrianum GB 56.1	GCA_003254545	contig	GenBank	1685414 tax ID	*

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GC-content

34.2 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium tistrianum GB 56.1 NCBI: GCA_003254545.1
[Ref.: #69480]	flagellated	no	93.162	no
[Ref.: #69480]	gram-positive	no	98.648	yes
[Ref.: #69480]	anaerobic	no	99.699	yes
[Ref.: #69480]	halophile	no	96.052	yes
[Ref.: #69480]	spore-forming	no	93.282	yes
[Ref.: #69480]	aerobic	yes	91.875	no
[Ref.: #69480]	glucose-util	yes	92.498	yes
[Ref.: #69480]	thermophile	no	99.507	yes
[Ref.: #69480]	motile	no	75.335	no
[Ref.: #69480]	glucose-ferment	no	89.832	no

Availability in culture collections External links

[Ref.: #43956]

Culture collection no.

TISTR 1612, KCTC 42679

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium tagetis sp. nov., a novel urea-hydrolysing bacterium isolated from the roots of Tagetes patula.	Chhetri G, Kim I, Kang M, Kim J, So Y, Seo T	Int J Syst Evol Microbiol	10.1099/ijsem.0.004984	2021	*
Phylogeny	Flavobacterium zhairuonensis sp. nov., a gliding bacterium isolated from marine sediment of the East China Sea.	Debnath SC, Miyah AMA, Chen C, Sheng H, Xu XW, Wu YH, Zheng DQ, Xu JZ, Di YN, Wang PM, Shen L	J Microbiol	10.1007/s12275-019-9194-4	2019	*
Phylogeny	Flavobacterium effusum sp. nov., isolated from a freshwater river.	Chen WM, Su CL, Kwon SW, Sheu SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.002944	2018	*
Phylogeny	Flavobacterium tistrianum sp. nov., a gliding bacterium isolated from soil.	Suwannachart C, Rueangyotchanthana K, Srichuay S, Pheng S, Fungsin B, Phoonsiri C, Kim SG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001016	2016	*
Phylogeny	Flavobacterium sharifuzzamanii sp. nov., Isolated from the Sediments of the East China Sea.	Debnath SC, Chen C, Liu SX, Di YN, Zheng DQ, Li XY, Xu XW, Xu JZ, Wang PM	Curr Microbiol	10.1007/s00284-018-1609-7	2019	*
Phylogeny	Flavobacterium foetidum sp. nov., isolated from ginseng soil.	Bu JH, Cha CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002553	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43956

Chatrudee Suwannachart, Kanjana Rueangyotchanthana, Suksan Srichuay, Sophea Pheng, Bundit Fungsin, Chantara Phoonsiri, Song-Gun Kim: Flavobacterium tistrianum sp. nov., a gliding bacterium isolated from soil. IJSEM 66: 2241 - 2246 2016 ( DOI 10.1099/ijsem.0.001016 , PubMed 26970735 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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