Name: Luteimonas arsenica 26-35
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141071

Type strain:

Species: Luteimonas arsenica

Strain Designation: 26-35

Culture col. no.: KCTC 42824, CCTCC AB 2014326

NCBI tax ID(s): 1586242 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Luteimonas arsenica 26-35 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from arsenic-contaminated soil of the Jianghan plain, Hubei Province, China.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Lysobacterales*
	Family	*Lysobacteraceae*
	Genus	*Luteimonas*
	Species	**Luteimonas arsenica**
	Full Scientific Name (LPSN)	Luteimonas arsenica Mu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43957]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %97.9

[Ref.: #43957]	Cell length	6-12 µm

[Ref.: #43957]	Cell shape	rod-shaped

[Ref.: #43957]	Motility	no

[Ref.: #43957]	Colony color	yellow
[Ref.: #43957]	Colony shape	circular
[Ref.: #43957]	Cultivation medium used	0.1 x Tryptic soy broth agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43957]

Culture medium

0.1 x Tryptic soy broth agar

[Ref.: #43957]

Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43957]			growth	10-42 °C
[Ref.: #43957]			optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #43957]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43957]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %97.8

[Ref.: #125439]

Ability of spore formation

no Confidence in %97.4

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43957]		NaCl		growth	1-5	%(w/v)

[Ref.: #43957]

Observation

quinone Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43957]	casein	+	hydrolysis
[Ref.: #43957]	esculin ferric citrate	+/-	hydrolysis
[Ref.: #43957]	gelatin ChEBI	+	hydrolysis
[Ref.: #43957]	itaconate ChEBI	+/-	assimilation
[Ref.: #43957]	L-arabinose ChEBI	+	assimilation
[Ref.: #43957]	L-histidine ChEBI	+/-	assimilation
[Ref.: #43957]	N-acetylglucosamine ChEBI	+	assimilation
[Ref.: #43957]	nitrate ChEBI	+	reduction
[Ref.: #43957]	potassium 2-dehydro-D-gluconate	+/-	assimilation
[Ref.: #43957]	sodium citrate ChEBI	-	hydrolysis
[Ref.: #43957]	sodium malonate ChEBI	+/-	assimilation
[Ref.: #43957]	starch ChEBI	+	hydrolysis
[Ref.: #43957]	tyrosine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43957]	ampicillin ChEBI	yes	10000	µg/mL
[Ref.: #43957]	carbenicillin ChEBI	yes	100000	µg/mL
[Ref.: #43957]	chloramphenicol ChEBI				yes	100	µg/mL
[Ref.: #43957]	vancomycin ChEBI				yes	30	µg/mL

	Metabolite production	Metabolite	Production
[Ref.: #43957]		hydrogen sulfide ChEBI	no
[Ref.: #43957]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43957]	acid phosphatase	+	3.1.3.2
[Ref.: #43957]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43957]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43957]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43957]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43957]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43957]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43957]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43957]	beta-galactosidase	-	3.2.1.23
[Ref.: #43957]	beta-glucosidase	+	3.2.1.21
[Ref.: #43957]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43957]	catalase	+	1.11.1.6
[Ref.: #43957]	cystine arylamidase	-	3.4.11.3
[Ref.: #43957]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43957]	esterase (C 4)	+
[Ref.: #43957]	esterase Lipase (C 8)	+
[Ref.: #43957]	leucine arylamidase	+	3.4.11.1
[Ref.: #43957]	lipase (C 14)	-
[Ref.: #43957]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43957]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43957]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43957]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43957]	trypsin	+	3.4.21.4
[Ref.: #43957]	urease	-	3.5.1.5
[Ref.: #43957]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43957]	Sample type/isolated from	arsenic-contaminated soil of the Jianghan plain, Hubei Province, China
[Ref.: #43957]	Geographic location (country and/or sea, region)	Jianghan plain, Hubei Province
[Ref.: #43957]	Country	China
[Ref.: #43957]	Country ISO 3 Code	CHN
[Ref.: #43957]	Continent	Asia
[Ref.: #43957]	Enrichment culture	0.1 x tryptic soy broth agar
[Ref.: #43957]	Enrichment culture composition	supplemented with 5.0 mM arsenate
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Heavy metal
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43957]	Luteimonas arsenica strain 26-35 16S ribosomal RNA gene, partial sequence	KP208749		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Luteimonas arsenica 26-35	GCA_004352825	contig	GenBank ENA	1586242 tax ID	*
[Ref.: #66792]	Luteimonas arsenica 26-35	2881082673	draft	JGI IMG/M	1586242 tax ID	*

[Ref.: #43957]

GC-content

71.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Luteimonas arsenica 26-35 NCBI: GCA_004352825
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	97.4
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	85.2
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97.9
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.8

Availability in culture collections External links

[Ref.: #43957]

Culture collection no.

KCTC 42824, CCTCC AB 2014326

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Luteimonas granuli sp. nov., Isolated from Granules of the Wastewater Treatment Plant.	Siddiqi MZ, Yeon JM, Choi H, Lee JH, Kim SY, Wee JH, Im WT	Curr Microbiol	10.1007/s00284-020-02066-4	2020	*
Phylogeny	Luteimonas yindakuii sp. nov. isolated from the leaves of Dandelion (Taraxacum officinale) on the Qinghai-Tibetan Plateau.	Zhang S, Wang X, Yang J, Lu S, Lai XH, Jin D, Pu J, Li J, Huang Y, Zhang G, Zhu W, Huang Y, Tian Z, Zhou J, Dong K, Lei W, Ren Z, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003863	2020	*
Phylogeny	Luteimonas lumbrici sp. nov., a novel bacterium isolated from wormcast.	Cha QY, Zhou XK, Zhang XF, Li M, Wei YQ, Zhang TK, Qin SC, Liu ZY, Wang XJ, Liu JJ, Zhu ML, Mo MH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003799	2020	*
Phylogeny	Luteimonas arsenica sp. nov., an arsenic-tolerant bacterium isolated from arsenic-contaminated soil.	Mu Y, Pan Y, Shi W, Liu L, Jiang Z, Luo X, Zeng XC, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.001024	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43957

Yao Mu, Yunfan Pan, Wanxia Shi, Lan Liu, Zhao Jiang, Xuesong Luo, Xian-Chun Zeng, Wen-Jun Li: Luteimonas arsenica sp. nov., an arsenic-tolerant bacterium isolated from arsenic-contaminated soil. IJSEM 66: 2291 - 2296 2016 ( DOI 10.1099/ijsem.0.001024 , PubMed 26978245 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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