Name: Sphingomonas carri PR0302
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141052

Type strain:

Species: Sphingomonas carri

Strain Designation: PR0302

Culture col. no.: KACC 18487, NBRC 111532

NCBI tax ID(s): 1634989 (species)

Section

Sphingomonas carri PR0302 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from biofilm growing on surface of car evaporator core collected in Korea.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Sphingomonadaceae*
	Genus	*Sphingomonas*
	Species	**Sphingomonas carri**
	Full Scientific Name (LPSN)	Sphingomonas carri Lee et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43932]	Gram stain	negative

[Ref.: #43932]	Cell length	2.3-3.8 µm

[Ref.: #43932]	Cell width	0.7-1.0 µm

[Ref.: #43932]	Cell shape	rod-shaped

[Ref.: #43932]	Colony color	yellow
[Ref.: #43932]	Colony shape	circular
[Ref.: #43932]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase soy agar

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43932]			growth	15-37 °C
[Ref.: #43932]			optimum	25 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43932]			optimum	7
[Ref.: #43932]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

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Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43932]		NaCl		growth	0-1	%(w/v)
[Ref.: #43932]		NaCl		optimum	0	%(w/v)

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Observation

quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43932]	adipate ChEBI	+	assimilation
[Ref.: #43932]	arginine ChEBI	-	hydrolysis
[Ref.: #43932]	casein	-	hydrolysis
[Ref.: #43932]	cellulose ChEBI	-	hydrolysis
[Ref.: #43932]	chitin ChEBI	-	hydrolysis
[Ref.: #43932]	D-glucose ChEBI	+	assimilation
[Ref.: #43932]	D-mannitol ChEBI	-	assimilation
[Ref.: #43932]	D-mannose ChEBI	+	assimilation
[Ref.: #43932]	decanoate ChEBI	-	assimilation
[Ref.: #43932]	dna ChEBI	-	hydrolysis
[Ref.: #43932]	esculin ChEBI	-	hydrolysis
[Ref.: #43932]	gelatin ChEBI	-	hydrolysis
[Ref.: #43932]	L-arabinose ChEBI	-	assimilation
[Ref.: #43932]	malate ChEBI	-	assimilation
[Ref.: #43932]	maltose ChEBI	+	assimilation
[Ref.: #43932]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43932]	nitrate ChEBI	-	reduction
[Ref.: #43932]	phenylacetate ChEBI	-	assimilation
[Ref.: #43932]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43932]	sodium citrate ChEBI	-	assimilation
[Ref.: #43932]	starch ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43932]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43932]	acid phosphatase	+	3.1.3.2
[Ref.: #43932]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43932]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43932]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43932]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43932]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43932]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43932]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43932]	beta-galactosidase	-	3.2.1.23
[Ref.: #43932]	beta-glucosidase	-	3.2.1.21
[Ref.: #43932]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43932]	catalase	+	1.11.1.6
[Ref.: #43932]	cystine arylamidase	+	3.4.11.3
[Ref.: #43932]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43932]	esterase (C 4)	+
[Ref.: #43932]	esterase Lipase (C 8)	+
[Ref.: #43932]	leucine arylamidase	+	3.4.11.1
[Ref.: #43932]	lipase (C 14)	-
[Ref.: #43932]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43932]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43932]	trypsin	-	3.4.21.4
[Ref.: #43932]	urease	-	3.5.1.5
[Ref.: #43932]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

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Fatty acid	Percentage
C16:0	40.1
C18:1ω7c / C18:1ω6c	25.3
C14:0 2OH	14
C14:0	9.8
C18:0	4.8
11-methyl C18:1ω7c	3.2
C18:1 2OH	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43932]	Sample type/isolated from	biofilm growing on surface of car evaporator core collected in Korea
[Ref.: #43932]	Country	Republic of Korea
[Ref.: #43932]	Country ISO 3 Code	KOR
[Ref.: #43932]	Continent	Asia
[Ref.: #43932]	Enrichment culture	R2A agar
[Ref.: #43932]	Enrichment culture duration	7 days
[Ref.: #43932]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Engineered product
#Environmental	#Air	#Outdoor Air
#Environmental	#Biofilm	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43932]	16S rRNA gene sequence	KP185150		GenBank

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GC-content

67.8 mol%

real time PCR (RTD-PCR)

Availability in culture collections External links

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Culture collection no.

KACC 18487, NBRC 111532

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sphingomonas carri sp. nov., isolated from a car air-conditioning system.	Lee H, Kim DU, Lee S, Yun J, Park S, Yoon JH, Park SY, Ka JO	Int J Syst Evol Microbiol	10.1099/ijsem.0.002250	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43932

Hyosun Lee, Dong-Uk Kim, Suyeon Lee, Jungpyo Yun, Sooyeon Park, Jung-Hoon Yoon, So Yoon Park, Jong-Ok Ka: Sphingomonas carri sp. nov., isolated from a car air-conditioning system. IJSEM 67: 4069 - 4074 2017 ( DOI 10.1099/ijsem.0.002250 , PubMed 28905694 )

* These data were automatically processed and therefore are not curated

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