Saliphagus infecundisoli (CGMCC 1.15824, DSM 101065, KCTC 4228)

Name: Saliphagus infecundisoli (CGMCC 1.15824, DSM 101065, KCTC 4228)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141051

Type strain

Culture col. no. CGMCC 1.15824 DSM 101065 KCTC 4228 YIM 93745 JCM 17436

NCBI tax ID(s) 1849069

Special Collections DSMZ JCM KCTC Literature strains

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Saliphagus infecundisoli KCTC 4228T is an aerobe, extremely halophilic, chemoorganotroph prokaryote that forms circular colonies and was isolated from saline soil sample collected from Loulan, Lop Nur region in Xinjiang, China.

Gram-negative coccus-shaped colony-forming aerobe extremely halophilic chemoorganotroph genome sequence 16S sequence

Name and taxonomic classification

SI-ID 404561

KCTC 4228,DSM 101065

@ref 20215

Last LPSN update 2025-12-16 10:03:45

Domain Methanobacteriati

Phylum Methanobacteriota

Class Halobacteria

Order Halobacteriales

Family Natrialbaceae

Genus Saliphagus

Species Saliphagus infecundisoli

Full scientific name Saliphagus infecundisoli Yin et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape
43931	negative	1.0-1.3 µm	1.0-1.3 µm	coccus-shaped
67771				coccus-shaped
67771	negative

Colony morphology

@ref	Colony color	Colony shape
43931	light-yellowish pink	circular

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
64902	HALOBACTERIA MEDIUM (DSMZ Medium 372)		Medium recipe at MediaDive	Name: HALOBACTERIA MEDIUM (DSMZ Medium 372; with strain-specific modifications) Composition: NaCl 200.0 g/l Agar 20.0 g/l Starch 20.0 g/l MgSO4 x 7 H2O 20.0 g/l Casamino acids 5.0 g/l Yeast extract 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
43931	positive	growth	25-50
43931	positive	optimum	37
64902	positive	growth	37
67770	positive	growth	37
67771	positive	growth	37

Culture pH

@ref	Ability	Type	PH
43931	positive	optimum	7.0-7.5
43931	positive	growth	6.0-8.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43931	aerobe
67771	aerobe

Nutrition type

43931

Typechemoorganotroph

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43931	extremely halophilic	NaCl	positive	growth	5-35 %(w/v)
43931		NaCl	positive	optimum	15-20 %(w/v)

Metabolite utilization

@ref	Metabolite	Utilization activity	Kind of utilization tested
43931	casein	+	hydrolysis
43931	D-fructose	-	carbon source
43931	D-galactose	-	carbon source
43931	D-glucose	+	builds acid from
43931	D-glucose	+	carbon source
43931	D-mannitol	-	carbon source
43931	D-mannose	+	carbon source
43931	D-xylose	-	carbon source
43931	disodium fumarate	-	carbon source
43931	dna	-	hydrolysis
43931	gamma-cyclodextrin	+	carbon source
43931	gelatin	+	hydrolysis
43931	glycerol	-	carbon source
43931	L-alanine	-	carbon source
43931	L-arginine	-	carbon source
43931	L-aspartate	+	carbon source
43931	L-glutamate	+	carbon source
43931	L-histidine	-	carbon source
43931	L-lysine	+	carbon source
43931	L-ornithine	+	carbon source
43931	L-phenylalanine	-	carbon source
43931	lactose	-	carbon source
43931	maltose	-	carbon source
43931	nitrate	+	reduction
43931	nitrite	-	reduction
43931	raffinose	+	carbon source
43931	sodium acetate	-	carbon source
43931	sodium citrate	-	carbon source
43931	sodium pyruvate	+	carbon source
43931	sodium succinate	+	carbon source
43931	starch	+	carbon source
43931	starch	+	hydrolysis
43931	sucrose	+	builds acid from
43931	sucrose	+	carbon source
43931	trehalose	+	carbon source
43931	tween 20	+	hydrolysis
43931	tween 40	-	hydrolysis
43931	tween 60	-	hydrolysis
43931	tween 80	-	hydrolysis
43931	xylitol	-	carbon source

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.
43931	338412	(-)-anisomycin	20 µg (disc)
43931	28971	ampicillin
43931	28669	bacitracin	0.04 Unit (disc)
43931	17698	chloramphenicol
43931	100241	ciprofloxacin
43931	48923	erythromycin
43931	17833	gentamicin
43931	7507	neomycin
43931	100246	norfloxacin
43931	28368	novobiocin	30 µg (disc)
43931	17334	penicillin
43931	28077	rifampicin
43931	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43931	16136 ChEBI	hydrogen sulfide
43931	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43931	arginine decarboxylase	-	4.1.1.19
43931	catalase	+	1.11.1.6
43931	cytochrome oxidase	+	1.9.3.1
43931	lysine decarboxylase	-	4.1.1.18
43931	ornithine decarboxylase	-	4.1.1.17

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Condition	#Saline
#Environmental	#Terrestrial

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
43931	saline (7%, pH 6.8) soil sample collected from Loulan, Lop Nur region in Xinjiang, China	Loulan, Lop Nur region in Xinjiang	China	CHN	Asia	40.2333	90.2667 40.2333/90.2667	modified Gause medium	soluble starch 5 g/L; lotus root starch 5 g/L; KNO3 1 g/L; MgSO4.7H2O 0.5 g/L; K2HPO4 0.5 g/L; NaCl 130 g/L; trace solution (2 % FeSO4.7H2O; 1 % MnCl2.4H2O; 1 % ZnSO4.7H2O; 1 % CuSO4.5H2O) 1 ml, pH 7.2	4 weeks	37
64902	saline soil	Xinjiang province, Lop Nur region, Loulan ancient city	China	CHN	Asia
67770	Saline soil from Loulan	Xingjiang Province	China	CHN	Asia
67771	From saline soil, salt lake	Loulan ancient city, Xinjiang province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KY419833 (>99% sequence identity) for Saliphagus infecundisoli subclade from Microbeatlas

Aquatic Samples	31
Soil Samples	30
Animal Samples	4
Plant Samples
Total Samples	65

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
64902	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2017737v1 assembly for Saliphagus infecundisoli YIM 93745	contig	GCA_020177375	1849069.8	8048024234	1849069	61.09
124043	ASM4265226v1 assembly for Saliphagus infecundisoli CGMCC 1.15824	scaffold	GCA_042652265			1849069	53.58

Genome browser: GCA_020177375

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
64902	Saliphagus infecundisoli strain YIM 93745 16S ribosomal RNA gene, partial sequence	KY419833	1478		1849069
124043	Saliphagus infecundisoli strain YIM 93745 16S ribosomal RNA gene, partial sequence.	KX151662	1482		1849069

GC content

@ref	GC-content (mol%)	Method
64902	64.6	high performance liquid chromatography (HPLC)
67771	64.6

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Saliphagus infecundisoli YIM 93745
NCBI: GCA_020177375.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	79.14	no
125438	anaerobic	anaerobicⓘ	no	84.52	yes
125438	aerobic	aerobicⓘ	yes	81.79	yes
125438	spore-forming	spore-formingⓘ	no	84.37	no
125438	thermophilic	thermophileⓘ	no	80.23	no
125438	flagellated	motile2+ⓘ	no	87.50	yes

Literature

Title	Authors	Journal	DOI	Year
Natronoglomus mannanivorans gen. nov., sp. nov., beta-1,4-mannan utilizing natronoarchaea from hypersaline soda lakes.	Sorokin DY, Elcheninov AG, Bale NJ, Sinninghe Damste JS, Kublanov IV.	Front Microbiol	10.3389/fmicb.2024.1364606	2024
Natronobiforma cellulositropha gen. nov., sp. nov., a novel haloalkaliphilic member of the family Natrialbaceae (class Halobacteria) from hypersaline alkaline lakes.	Sorokin DY, Khijniak TV, Kostrikina NA, Elcheninov AG, Toshchakov SV, Bale NJ, Damste JSS, Kublanov IV.	Syst Appl Microbiol	10.1016/j.syapm.2018.04.002	2018
Saliphagus infecundisoli gen. nov., sp. nov., an extremely halophilic archaeon isolated from a saline soil.	Yin XQ, Liu BB, Chu X, Salam N, Li X, Yang ZW, Zhang Y, Xiao M, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002270	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43931	Xiao-Qing Yin, Bing-Bing Liu, Xiao Chu, Nimaichand Salam, Xin Li, Zi-Wen Yang, Yao Zhang, Min Xiao, Wen-Jun Li: Saliphagus infecundisoli gen. nov., sp. nov., an extremely halophilic archaeon isolated from a saline soil. IJSEM 67: 4154 - 4160 2017 ( DOI 10.1099/ijsem.0.002270 , PubMed 28905703 )
#64902	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101065
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Saliphagus infecundisoli (CGMCC 1.15824, DSM 101065, KCTC 4228)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_020177375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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