Name: Hydrogenophaga aquatica CC-KL-3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141037

Type strain:

Species: Hydrogenophaga aquatica

Strain Designation: CC-KL-3

Culture col. no.: BCRC 80937T, JCM 31216, BCRC 80937

Strain history: C.-C. Young; Coll. of Agric. & Nat. Resour., Natl. Chung Hsing Univ., Taiwan; CC-KL-3.

NCBI tax ID(s): 1854763 (species)

Section

Hydrogenophaga aquatica CC-KL-3 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from spring water sample was collected from the Jhihben hot spring, Taitung county, Taiwan.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Comamonadaceae*
	Genus	*Hydrogenophaga*
	Species	**Hydrogenophaga aquatica**
	Full Scientific Name (LPSN)	Hydrogenophaga aquatica Lin et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43917]	Gram stain	negative

[Ref.: #43917]	Cell length	0.6-0.8 µm

[Ref.: #43917]	Cell width	0.3-0.4 µm

[Ref.: #43917]	Cell shape	rod-shaped

[Ref.: #43917]	Motility	no

[Ref.: #43917]	Colony size	1-2 mm
[Ref.: #43917]	Colony color	yellowish
[Ref.: #43917]	Colony shape	circular
[Ref.: #43917]	Incubation period	2 days
[Ref.: #43917]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43917]

Culture medium

Nutrient agar (NA)

[Ref.: #43917]

Culture medium growth

		Temperature
[Ref.: #43917]	growth	15-42 °C
[Ref.: #43917]	optimum	25-30 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #43917]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43917]			optimum	7
[Ref.: #43917]			growth	6.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43917]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43917]		NaCl		growth	0-2	%(w/v)

[Ref.: #43917]

Observation

quinone Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43917]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #43917]	bromosuccinate ChEBI	+	oxidation
[Ref.: #43917]	cis-aconitate ChEBI	+	oxidation
[Ref.: #43917]	citrate ChEBI	+	oxidation
[Ref.: #43917]	D-alanine ChEBI	+	oxidation
[Ref.: #43917]	D-fructose ChEBI	+	oxidation
[Ref.: #43917]	D-galactose ChEBI	+	oxidation
[Ref.: #43917]	D-galacturonic acid ChEBI	+	oxidation
[Ref.: #43917]	D-gluconate ChEBI	+	oxidation
[Ref.: #43917]	D-glucose ChEBI	+	assimilation
[Ref.: #43917]	D-mannose ChEBI	+	assimilation
[Ref.: #43917]	D-mannose ChEBI	+	oxidation
[Ref.: #43917]	D-psicose ChEBI	+	oxidation
[Ref.: #43917]	dextrin ChEBI	+	oxidation
[Ref.: #43917]	gelatin ChEBI	-	hydrolysis
[Ref.: #43917]	glucuronamide ChEBI	+	oxidation
[Ref.: #43917]	L-alaninamide ChEBI	+	oxidation
[Ref.: #43917]	L-alanine ChEBI	+	oxidation
[Ref.: #43917]	L-alanylglycine ChEBI	+	oxidation
[Ref.: #43917]	L-arabinose ChEBI	+	assimilation
[Ref.: #43917]	L-arabinose ChEBI	+	oxidation
[Ref.: #43917]	L-asparagine ChEBI	+	oxidation
[Ref.: #43917]	L-aspartate ChEBI	+	oxidation
[Ref.: #43917]	L-glutamate ChEBI	+	oxidation
[Ref.: #43917]	L-leucine ChEBI	+	oxidation
[Ref.: #43917]	L-ornithine ChEBI	+	oxidation
[Ref.: #43917]	L-phenylalanine ChEBI	+	oxidation
[Ref.: #43917]	L-proline ChEBI	+	oxidation
[Ref.: #43917]	L-pyroglutamic acid ChEBI	+	oxidation
[Ref.: #43917]	L-threonine ChEBI	+	oxidation
[Ref.: #43917]	lactate ChEBI	+	oxidation
[Ref.: #43917]	malate ChEBI	+	assimilation
[Ref.: #43917]	maltose ChEBI	+	assimilation
[Ref.: #43917]	maltose ChEBI	+	oxidation
[Ref.: #43917]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #43917]	monomethyl succinate ChEBI	+	oxidation
[Ref.: #43917]	nitrate ChEBI	+	reduction
[Ref.: #43917]	phenylacetate ChEBI	+	assimilation
[Ref.: #43917]	potassium gluconate ChEBI	+	assimilation
[Ref.: #43917]	quinate ChEBI	+	oxidation
[Ref.: #43917]	skimmed milk	-	hydrolysis
[Ref.: #43917]	sodium citrate ChEBI	+	assimilation
[Ref.: #43917]	starch ChEBI	-	hydrolysis
[Ref.: #43917]	succinamate ChEBI	+	oxidation
[Ref.: #43917]	succinate ChEBI	+	oxidation
[Ref.: #43917]	sucrose ChEBI	+	oxidation
[Ref.: #43917]	trehalose ChEBI	+	oxidation
[Ref.: #43917]	turanose ChEBI	+	oxidation
[Ref.: #43917]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43917]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43917]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43917]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43917]	urocanic acid ChEBI	+	oxidation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43917]	acid phosphatase	+	3.1.3.2
[Ref.: #43917]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43917]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43917]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43917]	catalase	+	1.11.1.6
[Ref.: #43917]	cystine arylamidase	+	3.4.11.3
[Ref.: #43917]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43917]	DNase	-
[Ref.: #43917]	esterase (C 4)	+
[Ref.: #43917]	esterase Lipase (C 8)	+
[Ref.: #43917]	leucine arylamidase	+	3.4.11.1
[Ref.: #43917]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43917]	trypsin	+	3.4.21.4
[Ref.: #43917]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43917]

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	41.4
C16:0	28.9
C18:1ω7c / C18:1ω6c	11.9
C8:0 3OH	2.8
C15:0 iso 3OH	2.5
C17:0	2.2
C17:0 cyclo	2.1
C17:1 iso ω10c	1.3
C19:1ω7c / C19:1ω6c	1.3
C18:0	1
C15:1ω6c	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43917]	Sample type/isolated from	spring water sample was collected from the Jhihben hot spring, Taitung county, Taiwan
[Ref.: #43917]	Geographic location (country and/or sea, region)	Taitung county
[Ref.: #43917]	Country	Taiwan
[Ref.: #43917]	Country ISO 3 Code	TWN
[Ref.: #43917]	Continent	Asia
[Ref.: #43917]	Enrichment culture	Nutrient agar
[Ref.: #43917]	Enrichment culture duration	2 days
[Ref.: #43917]	Enrichment culture temperature	30 ̊C

[Ref.: #67770]	Sample type/isolated from	Jhihben hot spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Taitung
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Thermal spring

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Hydrogenophaga aquatica strain CC-KL-3 16S ribosomal RNA gene, partial sequence	KU358714	1489	ENA	1854763 tax ID

[Ref.: #43917]	GC-content	61.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	61.2-61.6 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #43917]

Culture collection no.

BCRC 80937T, JCM 31216, BCRC 80937

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hydrogenophaga aquatica sp. nov., isolated from a hot spring.	Lin SY, Hameed A, Wen CZ, Hsu YH, Liu YC, Lai WA, Young CC	Int J Syst Evol Microbiol	10.1099/ijsem.0.002146	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43917

Shih-Yao Lin, Asif Hameed, Cheng-Zhe Wen, Yi-Han Hsu, You-Cheng Liu, Wei-An Lai, Chiu-Chung Young: Hydrogenophaga aquatica sp. nov., isolated from a hot spring. IJSEM 67: 3716 - 3721 2017 ( DOI 10.1099/ijsem.0.002146 , PubMed 28901905 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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