Name: Bifidobacterium vansinderenii Tam10B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141014

Type strain:

Species: Bifidobacterium vansinderenii

Strain Designation: Tam10B

Culture col. no.: LMG 30126, CCUG 70655, CCUG 70655 A

NCBI tax ID(s): 1984871 (species)

SI-ID 411017

CCUG 70655 A

Section

Bifidobacterium vansinderenii Tam10B is a facultative anaerobe, Gram-positive bacterium that forms circular colonies and was isolated from faecal sample of emperor tamarin .

colony-forming
Gram-positive
facultative anaerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium vansinderenii**
	Full Scientific Name (LPSN)	Bifidobacterium vansinderenii Duranti et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43910]	Gram stain	positive

[Ref.: #43910]	Motility	no

[Ref.: #43910]	Type of hemolysis	gamma
[Ref.: #43910]	Colony size	1.0-2.5 mm
[Ref.: #43910]	Colony color	white
[Ref.: #43910]	Colony shape	circular
[Ref.: #43910]	Cultivation medium used	Man-Rogosa-Sharp

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43910]

Culture medium

Man-Rogosa-Sharp

[Ref.: #43910]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43910]		growth	25-42 °C
[Ref.: #43910]	no	growth	20 °C
[Ref.: #43910]	no	growth	45 °C

[Ref.: #43910]	Temperature range	psychrophilic
[Ref.: #43910]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #43910]			optimum	6
[Ref.: #43910]			growth	3.5-6.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43910]

Oxygen tolerance

facultative anaerobe

[Ref.: #43910]

Ability of spore formation

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43910]	arabinogalactan ChEBI	+	fermentation
[Ref.: #43910]	arabinose ChEBI	+	fermentation
[Ref.: #43910]	cellobiose ChEBI	+	fermentation
[Ref.: #43910]	fructose ChEBI	+	fermentation
[Ref.: #43910]	fucose ChEBI	+	fermentation
[Ref.: #43910]	galactose ChEBI	+	fermentation
[Ref.: #43910]	glucose ChEBI	+	fermentation
[Ref.: #43910]	glycogen ChEBI	+	fermentation
[Ref.: #43910]	inulin ChEBI	+	fermentation
[Ref.: #43910]	lactose ChEBI	+	fermentation
[Ref.: #43910]	maltodextrin ChEBI	+	fermentation
[Ref.: #43910]	maltose ChEBI	+	fermentation
[Ref.: #43910]	maltotriose ChEBI	+	fermentation
[Ref.: #43910]	mannitol ChEBI	+	fermentation
[Ref.: #43910]	mannose ChEBI	+	fermentation
[Ref.: #43910]	melibiose ChEBI	+	fermentation
[Ref.: #43910]	N-acetylgalactosamine ChEBI	+	fermentation
[Ref.: #43910]	N-acetylglucosamine ChEBI	+	fermentation
[Ref.: #43910]	pullulan ChEBI	+	fermentation
[Ref.: #43910]	raffinose ChEBI	+	fermentation
[Ref.: #43910]	rhamnose ChEBI	+	fermentation
[Ref.: #43910]	ribose ChEBI	+	fermentation
[Ref.: #43910]	sorbitol ChEBI	+	fermentation
[Ref.: #43910]	starch ChEBI	+	fermentation
[Ref.: #43910]	sucrose ChEBI	+	fermentation
[Ref.: #43910]	trehalose ChEBI	+	fermentation
[Ref.: #43910]	turanose ChEBI	+	fermentation
[Ref.: #43910]	xylose ChEBI	+	fermentation
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43910]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43910]	alpha-arabinosidase	+/-	3.2.1.55
[Ref.: #43910]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43910]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43910]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43910]	beta-galactosidase	+/-	3.2.1.23
[Ref.: #43910]	beta-glucosidase	-	3.2.1.21
[Ref.: #43910]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43910]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #43910]	glutamyl-glutamate arylamidase	+/-
[Ref.: #43910]	L-arginine arylamidase	+
[Ref.: #43910]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #43910]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43910]	pyroglutamic acid arylamidase	-
[Ref.: #43910]	serine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43910]	Sample type/isolated from	faecal sample of emperor tamarin (Saguinus imperator)
[Ref.: #43910]	Enrichment culture	Man-Rogosa-Sharpe agar
[Ref.: #43910]	Enrichment culture composition	supplemented with 50µg/mL Mupirocin
[Ref.: #43910]	Enrichment culture duration	2 days
[Ref.: #43910]	Enrichment culture temperature	37 ̊C

[Ref.: #63744]	Sample type/isolated from	Faeces,Emperor tamarin
[Ref.: #63744]	Sampling date	2014-09-16
[Ref.: #63744]	Geographic location (country and/or sea, region)	Emilia Romagna,Parma
[Ref.: #63744]	Country	Italy
[Ref.: #63744]	Country ISO 3 Code	ITA
[Ref.: #63744]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium vansinderenii Tam10B	GCA_002234915	contig	GenBank	1984871 tax ID	*
[Ref.: #66792]	Bifidobacterium vansinderenii Tam10B	2862017679	draft	JGI IMG/M	1984871 tax ID	*

[Ref.: #43910]

GC-content

62.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #43910]

Culture collection no.

LMG 30126, CCUG 70655, CCUG 70655 A

[Ref.: #96829]

SI-ID 411017

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of the phylogenetic diversity of five novel species belonging to the genus Bifidobacterium: Bifidobacterium castoris sp. nov., Bifidobacterium callimiconis sp. nov., Bifidobacterium goeldii sp. nov., Bifidobacterium samirii sp. nov. and Bifidobacterium dolichotidis sp. nov.	Duranti S, Lugli GA, Napoli S, Anzalone R, Milani C, Mancabelli L, Alessandri G, Turroni F, Ossiprandi MC, van Sinderen D, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.003306	2019	*
Phylogeny	Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator).	Duranti S, Mangifesta M, Lugli GA, Turroni F, Anzalone R, Milani C, Mancabelli L, Ossiprandi MC, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002243	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43910

Sabrina Duranti, Marta Mangifesta, Gabriele Andrea Lugli, Francesca Turroni, Rosaria Anzalone, Christian Milani, Leonardo Mancabelli, Maria Cristina Ossiprandi, Marco Ventura: Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator). IJSEM 67: 3987 - 3995 2017 ( DOI 10.1099/ijsem.0.002243 , PubMed 28893355 )

#63744 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 70655 A

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96829

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID411017.1 )

* These data were automatically processed and therefore are not curated

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