Name: Agaribacterium haliotis feces2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 141009

Type strain:

Species: Agaribacterium haliotis

Strain Designation: feces2

Culture col. no.: MCCC 1A11450, KCTC 52708

NCBI tax ID(s): 2013869 (species)

Special Collections

Section

Agaribacterium haliotis feces2 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from excreted faeces of abalone , from abalone breeding base, Jinjing town, Jinjiang county, Fujian province.

colony-forming
Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Agaribacterium*
	Species	**Agaribacterium haliotis**
	Full Scientific Name (LPSN)	Agaribacterium haliotis Huang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43905]	Gram stain	negative

[Ref.: #43905]	Cell length	1.0-1.5 µm

[Ref.: #43905]	Cell width	0.7 µm

[Ref.: #43905]	Cell shape	rod-shaped

[Ref.: #43905]	Motility	yes

[Ref.: #43905]	Flagellum arrangement	polar

[Ref.: #43905]	Colony size	0.8 mm
[Ref.: #43905]	Colony color	white
[Ref.: #43905]	Colony shape	circular
[Ref.: #43905]	Cultivation medium used	Marine broth 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43905]

Culture medium

Marine broth 2216

[Ref.: #43905]

Culture medium growth

[Ref.: #43905]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #43905]			growth	16-40 °C
[Ref.: #43905]			optimum	28-30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43905]

Observation

quinone Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43905]	adipate ChEBI	-	carbon source
[Ref.: #43905]	adipate ChEBI	-	growth
[Ref.: #43905]	agar ChEBI	+	degradation
[Ref.: #43905]	citrate ChEBI	-	carbon source
[Ref.: #43905]	D-glucose ChEBI	-	carbon source
[Ref.: #43905]	D-glucose ChEBI	-	growth
[Ref.: #43905]	D-mannitol ChEBI	-	carbon source
[Ref.: #43905]	D-mannitol ChEBI	-	growth
[Ref.: #43905]	D-mannose ChEBI	-	carbon source
[Ref.: #43905]	D-mannose ChEBI	-	growth
[Ref.: #43905]	decanoate ChEBI	-	carbon source
[Ref.: #43905]	decanoate ChEBI	-	growth
[Ref.: #43905]	esculin ChEBI	-	hydrolysis
[Ref.: #43905]	glucose ChEBI	+	fermentation
[Ref.: #43905]	L-arabinose ChEBI	-	carbon source
[Ref.: #43905]	L-arabinose ChEBI	-	growth
[Ref.: #43905]	malate ChEBI	-	carbon source
[Ref.: #43905]	malate ChEBI	-	growth
[Ref.: #43905]	maltose ChEBI	-	carbon source
[Ref.: #43905]	maltose ChEBI	-	growth
[Ref.: #43905]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43905]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43905]	nitrate ChEBI	+	reduction
[Ref.: #43905]	phenylacetate ChEBI	-	carbon source
[Ref.: #43905]	phenylacetate ChEBI	-	growth
[Ref.: #43905]	potassium gluconate ChEBI	-	carbon source
[Ref.: #43905]	potassium gluconate ChEBI	-	growth
[Ref.: #43905]	sodium citrate ChEBI	-	carbon source
[Ref.: #43905]	sodium citrate ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43905]	acetoin ChEBI	no
[Ref.: #43905]	hydrogen sulfide ChEBI	no
[Ref.: #43905]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43905]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43905]	acid phosphatase	+	3.1.3.2
[Ref.: #43905]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43905]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43905]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43905]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43905]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #43905]	arginine dihydrolase	+/-	3.5.3.6
[Ref.: #43905]	beta-D-fucosidase	+/-	3.2.1.38
[Ref.: #43905]	beta-galactosidase	+	3.2.1.23
[Ref.: #43905]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #43905]	beta-glucuronidase	+/-	3.2.1.31
[Ref.: #43905]	catalase	-	1.11.1.6
[Ref.: #43905]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43905]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43905]	esterase (C 4)	+/-
[Ref.: #43905]	esterase Lipase (C 8)	+/-
[Ref.: #43905]	gelatinase	+/-
[Ref.: #43905]	leucine arylamidase	+	3.4.11.1
[Ref.: #43905]	lipase (C 14)	+/-
[Ref.: #43905]	lysine decarboxylase	+/-	4.1.1.18
[Ref.: #43905]	N-acetyl-beta-glucosaminidase	+/-	3.2.1.52
[Ref.: #43905]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43905]	ornithine decarboxylase	+/-	4.1.1.17
[Ref.: #43905]	trypsin	+/-	3.4.21.4
[Ref.: #43905]	tryptophan deaminase	+/-	4.1.99.1
[Ref.: #43905]	urease	+/-	3.5.1.5
[Ref.: #43905]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43905]	Sample type/isolated from	excreted faeces of abalone (Haliotis discus hannai), from abalone breeding base, Jinjing town, Jinjiang county, Fujian province
[Ref.: #43905]	Sampling date	2016-10-30
[Ref.: #43905]	Geographic location (country and/or sea, region)	Jinjing town, Jinjiang county, Fujian province
[Ref.: #43905]	Country	China
[Ref.: #43905]	Country ISO 3 Code	CHN
[Ref.: #43905]	Continent	Asia
[Ref.: #43905]	Enrichment culture	Marine agar 2216
[Ref.: #43905]	Enrichment culture duration	3 days
[Ref.: #43905]	Enrichment culture temperature	25 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43905]	Agaribacterium haliotis strain feces2 16S ribosomal RNA gene, partial sequence	KY400200		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agaribacterium haliotis feces2	GCA_002312815	contig	GenBank ENA	2013869 tax ID	*
[Ref.: #66792]	Agaribacterium haliotis feces2	2788499912	draft	JGI IMG/M	2013869 tax ID	*

[Ref.: #43905]

GC-content

50.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #43905]

Culture collection no.

MCCC 1A11450, KCTC 52708

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agaribacterium haliotis gen. nov., sp. nov., isolated from abalone faeces.	Huang Z, Lai Q, Zhang D, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002199	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43905

Zhaobin Huang, Qiliang Lai, Demin Zhang, Zongze Shao: Agaribacterium haliotis gen. nov., sp. nov., isolated from abalone faeces. IJSEM 67: 3819 - 3823 2017 ( DOI 10.1099/ijsem.0.002199 , PubMed 28901895 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Agaribacterium haliotis in external resources:
SILVA
BRENDA
PANGAEA
GBIF