Name: Agaribacterium haliotis feces2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 141009

Type strain:

Species: Agaribacterium haliotis

Strain Designation: feces2

Culture col. no.: MCCC 1A11450, KCTC 52708

NCBI tax ID(s): 2013869 (species)

Section

Agaribacterium haliotis feces2 is a Gram-negative, motile, rod-shaped bacterium that forms circular colonies and was isolated from excreted faeces of abalone , from abalone breeding base, Jinjing town, Jinjiang county, Fujian province.

colony-forming
Gram-negative
motile
rod-shaped
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Agaribacterium*
	Species	**Agaribacterium haliotis**
	Full Scientific Name (LPSN)	Agaribacterium haliotis Huang et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43905]	Gram stain	negative

[Ref.: #43905]	Cell length	1.0-1.5 µm

[Ref.: #43905]	Cell width	0.7 µm

[Ref.: #43905]	Cell shape	rod-shaped

[Ref.: #43905]	Motility	yes

[Ref.: #43905]	Flagellum arrangement	polar

[Ref.: #43905]	Colony size	0.8 mm
[Ref.: #43905]	Colony color	white
[Ref.: #43905]	Colony shape	circular
[Ref.: #43905]	Cultivation medium used	Marine broth 2216

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43905]

Culture medium

Marine broth 2216

[Ref.: #43905]

Culture medium growth

[Ref.: #43905]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #43905]			growth	16-40 °C
[Ref.: #43905]			optimum	28-30 °C

[Ref.: #43905]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43905]

Observation

quinone Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43905]	adipate ChEBI	-	carbon source
[Ref.: #43905]	adipate ChEBI	-	growth
[Ref.: #43905]	agar ChEBI	+	degradation
[Ref.: #43905]	citrate ChEBI	-	carbon source
[Ref.: #43905]	D-glucose ChEBI	-	carbon source
[Ref.: #43905]	D-glucose ChEBI	-	growth
[Ref.: #43905]	D-mannitol ChEBI	-	carbon source
[Ref.: #43905]	D-mannitol ChEBI	-	growth
[Ref.: #43905]	D-mannose ChEBI	-	carbon source
[Ref.: #43905]	D-mannose ChEBI	-	growth
[Ref.: #43905]	decanoate ChEBI	-	carbon source
[Ref.: #43905]	decanoate ChEBI	-	growth
[Ref.: #43905]	esculin ChEBI	-	hydrolysis
[Ref.: #43905]	glucose ChEBI	+	fermentation
[Ref.: #43905]	L-arabinose ChEBI	-	carbon source
[Ref.: #43905]	L-arabinose ChEBI	-	growth
[Ref.: #43905]	malate ChEBI	-	carbon source
[Ref.: #43905]	malate ChEBI	-	growth
[Ref.: #43905]	maltose ChEBI	-	carbon source
[Ref.: #43905]	maltose ChEBI	-	growth
[Ref.: #43905]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43905]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43905]	nitrate ChEBI	+	reduction
[Ref.: #43905]	phenylacetate ChEBI	-	carbon source
[Ref.: #43905]	phenylacetate ChEBI	-	growth
[Ref.: #43905]	potassium gluconate ChEBI	-	carbon source
[Ref.: #43905]	potassium gluconate ChEBI	-	growth
[Ref.: #43905]	sodium citrate ChEBI	-	carbon source
[Ref.: #43905]	sodium citrate ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43905]	acetoin ChEBI	no
[Ref.: #43905]	hydrogen sulfide ChEBI	no
[Ref.: #43905]	indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43905]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43905]	acid phosphatase	+	3.1.3.2
[Ref.: #43905]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43905]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #43905]	alpha-galactosidase	+/-	3.2.1.22
[Ref.: #43905]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43905]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #43905]	arginine dihydrolase	+/-	3.5.3.6
[Ref.: #43905]	beta-D-fucosidase	+/-	3.2.1.38
[Ref.: #43905]	beta-galactosidase	+	3.2.1.23
[Ref.: #43905]	beta-glucosidase	+/-	3.2.1.21
[Ref.: #43905]	beta-glucuronidase	+/-	3.2.1.31
[Ref.: #43905]	catalase	-	1.11.1.6
[Ref.: #43905]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43905]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43905]	esterase (C 4)	+/-
[Ref.: #43905]	esterase Lipase (C 8)	+/-
[Ref.: #43905]	gelatinase	+/-
[Ref.: #43905]	leucine arylamidase	+	3.4.11.1
[Ref.: #43905]	lipase (C 14)	+/-
[Ref.: #43905]	lysine decarboxylase	+/-	4.1.1.18
[Ref.: #43905]	N-acetyl-beta-glucosaminidase	+/-	3.2.1.52
[Ref.: #43905]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43905]	ornithine decarboxylase	+/-	4.1.1.17
[Ref.: #43905]	trypsin	+/-	3.4.21.4
[Ref.: #43905]	tryptophan deaminase	+/-	4.1.99.1
[Ref.: #43905]	urease	+/-	3.5.1.5
[Ref.: #43905]	valine arylamidase	+/-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43905]	Sample type/isolated from	excreted faeces of abalone (Haliotis discus hannai), from abalone breeding base, Jinjing town, Jinjiang county, Fujian province
[Ref.: #43905]	Sampling date	2016-10-30
[Ref.: #43905]	Geographic location (country and/or sea, region)	Jinjing town, Jinjiang county, Fujian province
[Ref.: #43905]	Country	China
[Ref.: #43905]	Country ISO 3 Code	CHN
[Ref.: #43905]	Continent	Asia
[Ref.: #43905]	Enrichment culture	Marine agar 2216
[Ref.: #43905]	Enrichment culture duration	3 days
[Ref.: #43905]	Enrichment culture temperature	25 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Mollusca
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43905]	16S rRNA gene sequence	KY400200		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Agaribacterium haliotis feces2	GCA_002312815	contig	GenBank	2013869 tax ID	*
[Ref.: #66792]	Agaribacterium haliotis feces2	2788499912	draft	JGI IMG/M	2013869 tax ID	*

[Ref.: #43905]

GC-content

50.5 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #43905]

Culture collection no.

MCCC 1A11450, KCTC 52708

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agaribacterium haliotis gen. nov., sp. nov., isolated from abalone faeces.	Huang Z, Lai Q, Zhang D, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.002199	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43905

Zhaobin Huang, Qiliang Lai, Demin Zhang, Zongze Shao: Agaribacterium haliotis gen. nov., sp. nov., isolated from abalone faeces. IJSEM 67: 3819 - 3823 2017 ( DOI 10.1099/ijsem.0.002199 , PubMed 28901895 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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