Agarilytica rhodophyticola (KCTC 42584, MCCC 1H00123, 17)

Name: Agarilytica rhodophyticola (KCTC 42584, MCCC 1H00123, 17)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 141010

Type strain

Strain Designation 17, 017

Culture col. no. KCTC 42584 MCCC 1H00123 17 017

NCBI tax ID(s) 1737490

Special Collections KCTC Literature strains

Links

Agarilytica rhodophyticola 17 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from Gracilaria blodgettii collected at the coast of Lingshui county, Hainan province, China.

Gram-negative motile rod-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286499

KCTC 42584

@ref 20215

Last LPSN update 2025-12-16 10:03:44

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Cellvibrionales

Family Cellvibrionaceae

Genus Agarilytica

Species Agarilytica rhodophyticola

Full scientific name Agarilytica rhodophyticola Ling et al. 2017

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement	Confidence
43906	negative	1.7-5.7 µm	0.3-1.1 µm	rod-shaped		polar
125438	negative						98

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43906	2-3 mm	yellow	circular	2 days	Marine agar 2216

Culture and growth conditions

Culture medium

@ref	Name	Growth
43906	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
43906	positive	optimum	28-33	mesophilic
43906	positive	growth	15-40
67771	positive	growth	28-33	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
43906	positive	optimum	8
43906	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
43906	aerobe
67771	aerobe

Spore formation

43906

Spore formationno

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43906	NaCl	positive	optimum	3 %(w/v)
43906	NaCl	positive	growth	2-4 %(w/v)

Observation

43906

Observationquinone Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43906	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
43906	12936 ChEBI	D-galactose	+	oxidation
43906	18024 ChEBI	D-galacturonic acid	+	oxidation
43906	15748 ChEBI	D-glucuronate	+	oxidation
43906	23652 ChEBI	dextrin	+	oxidation
43906	4853 ChEBI	esculin	+	builds acid from
43906	32323 ChEBI	glucuronamide	+	oxidation
43906	17306 ChEBI	maltose	+	builds acid from
43906	17632 ChEBI	nitrate	+	reduction
43906	53258 ChEBI	sodium citrate	-	carbon source
43906	28017 ChEBI	starch	+	hydrolysis
43906	17992 ChEBI	sucrose	+	oxidation
43906	32528 ChEBI	turanose	+	oxidation
43906	53426 ChEBI	tween 80	-	hydrolysis

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43906	31168	acetylspiramycin	30 µg (disc)
43906	28971	ampicillin		10 µg (disc)
43906	204928	cefotaxime		30 µg (disc)
43906	29007	ceftriaxone		30 µg (disc)
43906	17698	chloramphenicol		30 µg (disc)
43906	3745	clindamycin	30 µg (disc)
43906	48923	erythromycin		15 µg (disc)
43906	17833	gentamicin		10 µg (disc)
43906	6104	kanamycin		30 µg (disc)
43906	6472	lincomycin	2 µg (disc)
43906	100147	nalidixic acid		30 µg (disc)
43906	7507	neomycin		30 µg (disc)
43906	100246	norfloxacin		30 µg (disc)
43906	7731	ofloxacin		5 µg (disc)
43906	17334	penicillin	10 µg (disc)
43906	28077	rifampicin		5 µg (disc)
43906	17076	streptomycin		10 µg (disc)
43906	53727	sulfamethoxydiazine		5 µg (disc)
43906	27902	tetracycline	30 µg (disc)
43906	28864	tobramycin		10 µg (disc)
43906	28001	vancomycin	30 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43906	15688 ChEBI	acetoin
43906	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43906	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
43906	acid phosphatase	-	3.1.3.2
43906	alginase	-	3.2.1.16
43906	alkaline phosphatase	+	3.1.3.1
43906	alpha-galactosidase	-	3.2.1.22
43906	alpha-glucosidase	-	3.2.1.20
43906	alpha-mannosidase	-	3.2.1.24
43906	arginine dihydrolase	-	3.5.3.6
43906	beta-D-fucosidase	-	3.2.1.38
43906	beta-galactosidase	-	3.2.1.23
43906	beta-glucosidase	-	3.2.1.21
43906	beta-glucuronidase	-	3.2.1.31
43906	catalase	+	1.11.1.6
43906	cellulase	-	3.2.1.4
43906	chymotrypsin	-	3.4.4.5
43906	cystine arylamidase	-	3.4.11.3
43906	cytochrome oxidase	-	1.9.3.1
43906	esterase (C 4)	-
43906	esterase Lipase (C 8)	-
43906	gelatinase	+
43906	leucine arylamidase	+	3.4.11.1
43906	lipase (C 14)	-
43906	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43906	naphthol-AS-BI-phosphohydrolase	+
43906	trypsin	+	3.4.21.4
43906	urease	-	3.5.1.5
43906	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

43906

Fatty acid	Percentage
C16:0	30.81
C18:1ω7c	23.14
C16:1ω7c / C15:0 iso 2OH	12.2
C12:0	8.98
C10:0	6.82
C14:0 3OH / C16:1 iso	6.4
C10:0 3OH	5.96
C16:0 iso 3OH	3.16
C12:0 3OH	2.24
C15:0	1.16
C17:0	0.97
C18:0	0.78
C17:0 iso	0.74
C11:0	0.51

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Coast
#Host	#Algae	#Red algae

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
43906	Gracilaria blodgettii collected at the coast of Lingshui county, Hainan province, China	2014-06	Lingshui county, Hainan province	China	CHN	Asia	18.4083	110.062 18.4083/110.062	Marine agar 2216	3 days	28
67771	From Gracilaria blodgettii collected at the coast of Lingshui county		Hainan province	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KR610527 (>99% sequence identity) for Agarilytica rhodophyticola subclade from Microbeatlas

Aquatic Samples	977
Soil Samples	10
Animal Samples	26
Plant Samples	5
Total Samples	1018

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM215722v2 assembly for Agarilytica rhodophyticola 017	complete	GCA_002157225	1737490.4	2751185671	1737490	96.71

16S sequences

@ref	Description	Accession	Database
43906	Agarilytica rhodophyticola strain 017 16S ribosomal RNA gene, partial sequence	KR610527

GC content

@ref	GC-content (mol%)	Method
43906	40.9	genome sequence analysis
43906	40.2	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Agarilytica rhodophyticola 017
NCBI: GCA_002157225.2

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	yes
125438	anaerobic	anaerobicⓘ	no	92.03	no
125438	aerobic	aerobicⓘ	yes	82.80	yes
125438	spore-forming	spore-formingⓘ	no	86.75	yes
125438	thermophilic	thermophileⓘ	no	95.04	no
125438	flagellated	motile2+ⓘ	yes	84.39	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
	Biochemical characterization and key catalytic residue identification of a novel alpha-agarase with CBM2 domain.	Yuan D, Lv H, Wang T, Rao Y, Tang Y, Chu Y, Wang X, Lin J, Gao P, Song T.	Food Chem X	10.1016/j.fochx.2023.100915	2023
Phylogeny	Agarilytica rhodophyticola gen. nov., sp. nov., isolated from Gracilaria blodgettii.	Ling SK, Xia J, Liu Y, Chen GJ, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002193	2017

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#43906	Si-Kai Ling, Jun Xia, Yan Liu, Guan-Jun Chen, Zong-Jun Du: Agarilytica rhodophyticola gen. nov., sp. nov., isolated from Gracilaria blodgettii. IJSEM 67: 3778 - 3783 2017 ( DOI 10.1099/ijsem.0.002193 , PubMed 28879838 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Agarilytica rhodophyticola (KCTC 42584, MCCC 1H00123, 17)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile?

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_002157225

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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Fatty acid profile