Name: Aurantiacibacter aquimixticola JSSK-14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 140998

Type strain:

Species: Aurantiacibacter aquimixticola

Strain Designation: JSSK-14

Culture col. no.: KCTC 52764, NBRC 112765

Strain history: <- Jung-Hoon YOON, Sungkyunkwan Univ.

NCBI tax ID(s): 1958945 (species)

Special Collections

Section

When using BacDive for research please cite our paper

Aurantiacibacter aquimixticola JSSK-14 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from junction between the ocean and the Soesokkak freshwater spring at Jeju island, South Korea.

coccus-shaped
colony-forming
Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Aurantiacibacter*
	Species	**Aurantiacibacter aquimixticola**
	Full Scientific Name (LPSN)	Aurantiacibacter aquimixticola (Park et al. 2017) Xu et al. 2020

Synonym

Erythrobacter aquimixticola

Information on morphological and physiological properties Morphology

[Ref.: #43884]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %99.5

[Ref.: #43884]	Cell length	0.3-2.0 µm

[Ref.: #43884]	Cell width	0.3-0.6 µm

[Ref.: #43884]	Cell shape	coccus-shaped
[Ref.: #43884]	Cell shape	rod-shaped
[Ref.: #43884]	Cell shape	ovoid-shaped

[Ref.: #43884]	Motility	no

[Ref.: #43884]	Colony size	0.7-1.0 mm
[Ref.: #43884]	Colony color	depp orange-yellow
[Ref.: #43884]	Colony shape	circular
[Ref.: #43884]	Incubation period	5 days
[Ref.: #43884]	Cultivation medium used	Marine agar 2216

[Ref.: #43884]	Pigment production	yes
[Ref.: #43884]	Pigment name	Carotenoid pigments
[Ref.: #43884]	Pigment production	no
[Ref.: #43884]	Pigment name	Bacteriochlorophyll alpha

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43884]

Culture medium

Marine agar (MA)

[Ref.: #43884]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #43884]		optimum	30 °C
[Ref.: #43884]		growth	10-37 °C
[Ref.: #43884]	negative	growth	4 °C
[Ref.: #43884]	negative	growth	40 °C
[Ref.: #67771]		growth	30 °C

	Kind of pH		pH
[Ref.: #43884]		optimum	7.0-8.0
[Ref.: #43884]		growth	6
[Ref.: #43884]	no	growth	5.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43884]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %99

[Ref.: #43884]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %96.7

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43884]		NaCl		growth	0.5-6	%(w/v)
[Ref.: #43884]		NaCl		optimum	1-2	%(w/v)

[Ref.: #43884]	Observation	Mg2+ ions are required for growth
[Ref.: #43884]	Observation	quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43884]	acetate ChEBI	-	carbon source
[Ref.: #43884]	benzoate ChEBI	-	carbon source
[Ref.: #43884]	casein	-	hydrolysis
[Ref.: #43884]	cellobiose ChEBI	+	carbon source
[Ref.: #43884]	citrate ChEBI	-	carbon source
[Ref.: #43884]	D-fructose ChEBI	-	carbon source
[Ref.: #43884]	D-galactose ChEBI	-	carbon source
[Ref.: #43884]	D-glucose ChEBI	+	carbon source
[Ref.: #43884]	D-mannose ChEBI	-	carbon source
[Ref.: #43884]	D-xylose ChEBI	-	carbon source
[Ref.: #43884]	esculin ChEBI	-	hydrolysis
[Ref.: #43884]	formate ChEBI	-	carbon source
[Ref.: #43884]	gelatin ChEBI	-	hydrolysis
[Ref.: #43884]	hypoxanthine ChEBI	-	hydrolysis
[Ref.: #43884]	L-arabinose ChEBI	-	carbon source
[Ref.: #43884]	L-malate ChEBI	-	carbon source
[Ref.: #43884]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #43884]	maltose ChEBI	+	carbon source
[Ref.: #43884]	nitrate ChEBI	-	reduction
[Ref.: #43884]	pyruvate ChEBI	-	carbon source
[Ref.: #43884]	salicin ChEBI	-	carbon source
[Ref.: #43884]	sodium L-glutamate ChEBI	-	carbon source
[Ref.: #43884]	starch ChEBI	-	hydrolysis
[Ref.: #43884]	succinate ChEBI	-	carbon source
[Ref.: #43884]	sucrose ChEBI	-	carbon source
[Ref.: #43884]	trehalose ChEBI	-	carbon source
[Ref.: #43884]	tween 80 ChEBI	+	hydrolysis
[Ref.: #43884]	urea ChEBI	-	hydrolysis
[Ref.: #43884]	xanthine ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Concentration		Antibiotic resistance	Concentration
[Ref.: #43884]	ampicillin ChEBI				yes	10	µg (disc)
[Ref.: #43884]	carbenicillin ChEBI	yes	100	µg (disc)
[Ref.: #43884]	cefalotin ChEBI	yes	30	µg (disc)
[Ref.: #43884]	chloramphenicol ChEBI	yes	100	µg (disc)
[Ref.: #43884]	gentamicin ChEBI	yes	30	µg (disc)
[Ref.: #43884]	kanamycin ChEBI	yes	30	µg (disc)
[Ref.: #43884]	lincomycin ChEBI				yes	15	µg (disc)
[Ref.: #43884]	neomycin ChEBI	yes	30	µg (disc)
[Ref.: #43884]	novobiocin ChEBI	yes	5	µg (disc)
[Ref.: #43884]	oleandomycin ChEBI				yes	15	µg (disc)
[Ref.: #43884]	penicillin g ChEBI				yes	20	Unit (disc)
[Ref.: #43884]	polymyxin b ChEBI				yes	100	Unit (disc)
[Ref.: #43884]	streptomycin ChEBI				yes	50	µg (disc)
[Ref.: #43884]	tetracycline ChEBI	yes	30	µg (disc)
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43884]	acid phosphatase	-	3.1.3.2
[Ref.: #43884]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43884]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43884]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #43884]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43884]	catalase	+	1.11.1.6
[Ref.: #43884]	cystine arylamidase	-	3.4.11.3
[Ref.: #43884]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43884]	esterase (C 4)	+
[Ref.: #43884]	esterase Lipase (C 8)	+
[Ref.: #43884]	leucine arylamidase	+	3.4.11.1
[Ref.: #43884]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43884]	trypsin	-	3.4.21.4
[Ref.: #43884]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43884]

Fatty acid	Percentage
C18:1ω7c	65.9
C16:1ω6c / C16:1ω7c	6.4
C17:1ω6c	5.5
C16:0	5.3
C16:0 2OH	4
11-methyl C18:1ω7c	3.7
C14:0 2OH	3.6
C18:1ω5c	2
C16:1ω5c	0.8
C18:0	0.8
C15:0 2OH	0.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43884]	Sample type/isolated from	junction between the ocean and the Soesokkak freshwater spring at Jeju island, South Korea
[Ref.: #43884]	Geographic location (country and/or sea, region)	Jeju island
[Ref.: #43884]	Country	Republic of Korea
[Ref.: #43884]	Country ISO 3 Code	KOR
[Ref.: #43884]	Continent	Asia
[Ref.: #43884]	Enrichment culture	Marine agar 2216
[Ref.: #43884]	Enrichment culture temperature	25 ̊C

[Ref.: #67771]	Sample type/isolated from	From water of soesokkak
[Ref.: #67771]	Geographic location (country and/or sea, region)	Jeju
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Brackish

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KY614066 (>99% sequence identity) for Aurantiacibacter from Microbeatlas

Aquatic Samples	109
Soil Samples	12
Animal Samples	16
Plant Samples	6
Total Samples	143

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43884]	Aurantiacibacter aquimixticola strain JSSK-14 16S ribosomal RNA gene, partial sequence	KY614066		GenBank ENA

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aurantiacibacter aquimixticola JSSK-14	GCA_003605475	contig	GenBank ENA	1958945 tax ID	*
[Ref.: #66792]	Aurantiacibacter aquimixticola JSSK-14	2851252389	draft	JGI IMG/M	1958945 tax ID	*

[Ref.: #43884]

GC-content

63.5 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Aurantiacibacter aquimixticola JSSK-14 NCBI: GCA_003605475
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	96.7
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	52.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	99

Availability in culture collections External links

[Ref.: #43884]

Culture collection no.

KCTC 52764, NBRC 112765

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aurantiacibacter sediminis sp. nov., a marine bacterium isolated from a tidal flat.	Kim CH, Yoo Y, Kim D, Khim JS, Pathiraja D, Kim B, Choi IG, Kim JJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005406	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43884

Sooyeon Park, Yong-Taek Jung, Su Jung Choi, Jung-Hoon Yoon: Erythrobacter aquimixticola sp. nov., isolated from the junction between the ocean and a freshwater spring. IJSEM 67: 2964 - 2969 2017 ( DOI 10.1099/ijsem.0.002055 , PubMed 28820100 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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