Name: Paracoccus hibiscisoli THG-T2.31
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 140949

Type strain:

Species: Paracoccus hibiscisoli

Strain Designation: THG-T2.31

Culture col. no.: KACC 18933, CCTCC AB 2016182

NCBI tax ID(s): 2023261 (species)

Section

Paracoccus hibiscisoli THG-T2.31 is an aerobe, Gram-negative, rod-shaped bacterium that forms circular colonies and was isolated from Rizosphere of Mugunghwa in Kyung Hee University, Yongin, South Korea.

colony-forming
Gram-negative
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodobacterales*
	Family	*Paracoccaceae*
	Genus	*Paracoccus*
	Species	**Paracoccus hibiscisoli**
	Full Scientific Name (LPSN)	Paracoccus hibiscisoli Lin et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #43842]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

[Ref.: #43842]	Cell length	1.2-1.4 µm

[Ref.: #43842]	Cell width	0.8-1.0 µm

[Ref.: #43842]	Cell shape	rod-shaped

[Ref.: #43842]	Motility	no

[Ref.: #43842]	Colony size	1-2 mm
[Ref.: #43842]	Colony color	orange
[Ref.: #43842]	Colony shape	circular
[Ref.: #43842]	Incubation period	2 days
[Ref.: #43842]	Cultivation medium used	Tryptic soy agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Luria agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Tryptic soy agar

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Culture medium growth

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Culture medium

MacConkey agar

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Culture medium growth

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Culture medium

Marine agar (MA)

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Culture medium growth

	Temperatures	Kind of temperature		Temperature
[Ref.: #43842]			growth	10-35 °C
[Ref.: #43842]			optimum	28 °C

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Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43842]			optimum	7
[Ref.: #43842]			growth	5.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43842]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43842]		NaCl		growth	0-4	%(w/v)
[Ref.: #43842]		NaCl		optimum	1	%(w/v)

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Observation

quinone Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43842]	2-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #43842]	3-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43842]	3-hydroxybutyrate ChEBI	+	carbon source
[Ref.: #43842]	4-hydroxybenzoate ChEBI	-	carbon source
[Ref.: #43842]	5-dehydro-D-gluconate ChEBI	-	carbon source
[Ref.: #43842]	adipate ChEBI	+	carbon source
[Ref.: #43842]	casein	-	hydrolysis
[Ref.: #43842]	cellulose ChEBI	+	hydrolysis
[Ref.: #43842]	chitin ChEBI	-	hydrolysis
[Ref.: #43842]	citrate ChEBI	+	carbon source
[Ref.: #43842]	D-glucose ChEBI	+	carbon source
[Ref.: #43842]	D-mannitol ChEBI	+	carbon source
[Ref.: #43842]	D-mannose ChEBI	+	carbon source
[Ref.: #43842]	D-ribose ChEBI	+	carbon source
[Ref.: #43842]	D-sorbitol ChEBI	+	carbon source
[Ref.: #43842]	decanoate ChEBI	-	carbon source
[Ref.: #43842]	dna ChEBI	+	hydrolysis
[Ref.: #43842]	gluconate ChEBI	+	carbon source
[Ref.: #43842]	glucose ChEBI	+	builds acid from
[Ref.: #43842]	glycogen ChEBI	-	carbon source
[Ref.: #43842]	itaconate ChEBI	-	carbon source
[Ref.: #43842]	L-alanine 4-nitroanilide	+	carbon source
[Ref.: #43842]	L-arabinose ChEBI	+	carbon source
[Ref.: #43842]	L-fucose ChEBI	-	carbon source
[Ref.: #43842]	L-histidine ChEBI	+	carbon source
[Ref.: #43842]	L-proline ChEBI	+	carbon source
[Ref.: #43842]	L-rhamnose ChEBI	-	carbon source
[Ref.: #43842]	L-serine ChEBI	+	carbon source
[Ref.: #43842]	L-tyrosine ChEBI	-	hydrolysis
[Ref.: #43842]	lactate ChEBI	+	carbon source
[Ref.: #43842]	malate ChEBI	+	carbon source
[Ref.: #43842]	maltose ChEBI	+	carbon source
[Ref.: #43842]	melibiose ChEBI	+	carbon source
[Ref.: #43842]	methanol ChEBI	-	growth
[Ref.: #43842]	methylamine ChEBI	-	growth
[Ref.: #43842]	myo-inositol ChEBI	+	carbon source
[Ref.: #43842]	N-acetylglucosamine ChEBI	-	carbon source
[Ref.: #43842]	nitrate ChEBI	-	reduction
[Ref.: #43842]	phenylacetate ChEBI	+	carbon source
[Ref.: #43842]	propionate ChEBI	+	carbon source
[Ref.: #43842]	salicin ChEBI	+	carbon source
[Ref.: #43842]	sodium acetate ChEBI	+	carbon source
[Ref.: #43842]	sodium citrate ChEBI	+	carbon source
[Ref.: #43842]	sodium malonate ChEBI	+	carbon source
[Ref.: #43842]	starch ChEBI	+	hydrolysis
[Ref.: #43842]	suberic acid ChEBI	+	carbon source
[Ref.: #43842]	sucrose	+	carbon source
[Ref.: #43842]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43842]	tween 80 ChEBI	-	hydrolysis
[Ref.: #43842]	valerate ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43842]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43842]	acid phosphatase	+	3.1.3.2
[Ref.: #43842]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43842]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43842]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43842]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43842]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43842]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43842]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43842]	beta-galactosidase	+	3.2.1.23
[Ref.: #43842]	beta-glucosidase	+	3.2.1.21
[Ref.: #43842]	beta-glucuronidase	+/-	3.2.1.31
[Ref.: #43842]	catalase	+	1.11.1.6
[Ref.: #43842]	cystine arylamidase	+	3.4.11.3
[Ref.: #43842]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43842]	esterase (C 4)	+
[Ref.: #43842]	esterase Lipase (C 8)	+
[Ref.: #43842]	leucine arylamidase	+/-	3.4.11.1
[Ref.: #43842]	lipase (C 14)	-
[Ref.: #43842]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43842]	naphthol-AS-BI-phosphohydrolase	+/-
[Ref.: #43842]	protease	+
[Ref.: #43842]	trypsin	+	3.4.21.4
[Ref.: #43842]	urease	+	3.5.1.5
[Ref.: #43842]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43842]

Fatty acid	Percentage
C18:1ω7c	83.4
C10:0 3OH	5.2
C18:0	4.3
C16:0	3.2
C14:0 3OH / C16:1 iso I	1.5
C18:3ω6c	1.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #43842]	Sample type/isolated from	Rizosphere of Mugunghwa (Hibiscus syriacus) in Kyung Hee University, Yongin, South Korea
[Ref.: #43842]	Sampling date	2015-10-05
[Ref.: #43842]	Geographic location (country and/or sea, region)	Yogin
[Ref.: #43842]	Country	Republic of Korea
[Ref.: #43842]	Country ISO 3 Code	KOR
[Ref.: #43842]	Continent	Asia
[Ref.: #43842]	Geographic location	37.2758°/127.1780°
[Ref.: #43842]	Enrichment culture	Tryptone soy agar
[Ref.: #43842]	Enrichment culture duration	1 week
[Ref.: #43842]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KX456191 (>99% sequence identity) for Paracoccus from Microbeatlas

Aquatic Samples	3236
Soil Samples	923
Animal Samples	6383
Plant Samples	456
Total Samples	10998

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43842]	16S rRNA gene sequence	KX456191		GenBank

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paracoccus hibiscisoli CCTCC AB2016182	GCA_005048265	contig	GenBank	2023261 tax ID	*
[Ref.: #66792]	Paracoccus hibiscisoli strain CCTCC AB2016182	2023261.3	wgs	PATRIC	2023261 tax ID	*
[Ref.: #66792]	Paracoccus hibiscisoli CCTCC AB2016182	2899275550	draft	JGI IMG/M	2023261 tax ID	*

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GC-content

69.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paracoccus hibiscisoli strain CCTCC AB2016182 PATRIC: 2023261.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paracoccus hibiscisoli strain CCTCC AB2016182 PATRIC: 2023261.3
[Ref.: #69480]	motile	no	66.227	yes
[Ref.: #69480]	gram-positive	no	97.36	yes
[Ref.: #69480]	anaerobic	no	97.606	yes
[Ref.: #69480]	aerobic	yes	91.266	yes
[Ref.: #69480]	halophile	no	71.909	yes
[Ref.: #69480]	spore-forming	no	95.379	no
[Ref.: #69480]	glucose-util	yes	91.534	yes
[Ref.: #69480]	flagellated	no	91.41	yes
[Ref.: #69480]	thermophile	no	98.346	yes
[Ref.: #69480]	glucose-ferment	no	85.319	no

Availability in culture collections External links

[Ref.: #43842]

Culture collection no.

KACC 18933, CCTCC AB 2016182

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paracoccus hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus).	Lin P, Yan ZF, Won KH, Yang JE, Li CT, Kook M, Wang QJ, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.001990	2017	*
Phylogeny	Paracoccus liaowanqingii sp. nov., isolated from Tibetan antelope (Pantholops hodgsonii).	Li J, Lu S, Jin D, Yang J, Lai XH, Huang Y, Tian Z, Dong K, Zhang S, Lei W, Pu J, Zhang G, Wu X, Huang Y, Ren Z, Wang S, Xu J	Int J Syst Evol Microbiol	10.1099/ijsem.0.003807	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#43842

Pei Lin, Zheng-Fei Yan, Kyung-Hwa Won, Jung-Eun Yang, Chang-Tian Li, MooChang Kook, Qi-Jun Wang, Tae-Hoo Yi: Paracoccus hibiscisoli sp. nov., isolated from the rhizosphere of Mugunghwa (Hibiscus syriacus). IJSEM 67: 2452 - 2458 2017 ( DOI 10.1099/ijsem.0.001990 , PubMed 28741997 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Paracoccus hibiscisoli strain CCTCC AB2016182

Paracoccus hibiscisoli strain CCTCC AB2016182

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