Name: Solirubrobacter ginsenosidimutans BXN5-15
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 14089

Type strain:

Species: Solirubrobacter ginsenosidimutans

Strain Designation: BXN5-15

Culture col. no.: DSM 21036, KACC 20671, LMG 24459, JCM 19086, NBRC 109969

Strain history: KACC 20671 <-- W.-T. Im BXN5-15.

NCBI tax ID(s): 490573 (species)

SI-ID 399603

DSM 21036

Special Collections

Section

Solirubrobacter ginsenosidimutans BXN5-15 is a bacterium that was isolated from soil of ginseng field.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Thermoleophilia*
	Order	*Solirubrobacterales*
	Family	*Solirubrobacteraceae*
	Genus	*Solirubrobacter*
	Species	**Solirubrobacter ginsenosidimutans**
	Full Scientific Name (LPSN)	Solirubrobacter ginsenosidimutans An et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69288]	Colony color	Ivory (1014), Light ivory (1015)
[Ref.: #69288]	Cultivation medium used	ISP 2

[Ref.: #69288]	Colony color	Khaki grey (7008)
[Ref.: #69288]	Cultivation medium used	ISP 3

[Ref.: #69288]	Colony color	Light ivory (1015)
[Ref.: #69288]	Cultivation medium used	suter with tyrosine

[Ref.: #69288]	Colony color	Pastel yellow (1034)
[Ref.: #69288]	Cultivation medium used	suter without tyrosine

[Ref.: #69288]	Pigment production	no
[Ref.: #69288]	Pigment name	Melanin
[Ref.: #69288]	Pigment production	no
[Ref.: #69288]	Pigment name	soluble pigment

[Ref.: #69288]	Multicellular complex forming ability	no
[Ref.: #69288]	Multicellular complex name	Aerial mycelium
[Ref.: #69288]	Medium Name (multicellularity)	ISP 2

[Ref.: #69288]	Multicellular complex forming ability	no
[Ref.: #69288]	Multicellular complex name	Aerial mycelium
[Ref.: #69288]	Medium Name (multicellularity)	ISP 3

[Ref.: #69288]	Multicellular complex forming ability	no
[Ref.: #69288]	Multicellular complex name	Aerial mycelium
[Ref.: #69288]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69288]	Multicellular complex forming ability	no
[Ref.: #69288]	Multicellular complex name	Aerial mycelium
[Ref.: #69288]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Plates (830, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69288]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69288]

Caption:

Plates (830, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69288]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15531]

Culture medium growth

[Ref.: #15531]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15531]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #15531]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69288]	arabinose ChEBI	-	growth
[Ref.: #69288]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69288]	fructose ChEBI	-	growth
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69288]	glucose ChEBI	-	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69288]	inositol ChEBI	-	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69288]	mannose ChEBI	-	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69288]	raffinose ChEBI	-	growth
[Ref.: #69288]	rhamnose ChEBI	-	growth
[Ref.: #69288]	sucrose ChEBI	-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69288]	xylose ChEBI	-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	-	3.1.3.1	* from API Coryne
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	-	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69288]	3782	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69288]	5966	not determinedn.d.	+/-	+	+/-	-	+	+/-	-	-	-	+	+/-	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15531]	Sample type/isolated from	soil of ginseng field
[Ref.: #15531]	Geographic location (country and/or sea, region)	Baekdu Mountain
[Ref.: #15531]	Country	China
[Ref.: #15531]	Country ISO 3 Code	CHN
[Ref.: #15531]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil of a ginseng field on Baekdu Mountain
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU332825 (>99% sequence identity) for Solirubrobacter from Microbeatlas

Aquatic Samples	27
Soil Samples	1154
Animal Samples	42
Plant Samples	377
Total Samples	1600

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15531]	Solirubrobacter ginsenosidimutans strain BXN5-15 16S ribosomal RNA gene, partial sequence	EU332825	1489	GenBank ENA	490573 tax ID

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GC-content

70.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #15531]

Culture collection no.

DSM 21036, KACC 20671, LMG 24459, JCM 19086, NBRC 109969

[Ref.: #83257]

SI-ID 399603

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Solirubrobacter phytolaccae sp. nov., an endophytic bacterium isolated from roots of Phytolacca acinosa Roxb.	Wei L, Ouyang S, Wang Y, Shen X, Zhang L	Int J Syst Evol Microbiol	10.1099/ijs.0.057554-0	2013	*
Phylogeny	Solirubrobacter ginsenosidimutans sp. nov., isolated from soil of a ginseng field.	An DS, Wang L, Kim MS, Bae HM, Lee ST, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.028431-0	2010	*

References

#15531

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21036

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69288

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#83257

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399603.1 )

* These data were automatically processed and therefore are not curated

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