Strain identifier

BacDive ID: 14089

Type strain: Yes

Species: Solirubrobacter ginsenosidimutans

Strain Designation: BXN5-15

Strain history: KACC 20671 <-- W.-T. Im BXN5-15.

NCBI tax ID(s): 490573 (species)

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General

@ref: 15531

BacDive-ID: 14089

DSM-Number: 21036

keywords: 16S sequence, Bacteria

description: Solirubrobacter ginsenosidimutans BXN5-15 is a bacterium that was isolated from soil of ginseng field.

NCBI tax id

  • NCBI tax id: 490573
  • Matching level: species

strain history

@refhistory
15531<- S.-T. Lee, KAIST; BXN5-15 <- W.-T. Im
67770KACC 20671 <-- W.-T. Im BXN5-15.

doi: 10.13145/bacdive14089.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Thermoleophilia
  • order: Solirubrobacterales
  • family: Solirubrobacteraceae
  • genus: Solirubrobacter
  • species: Solirubrobacter ginsenosidimutans
  • full scientific name: Solirubrobacter ginsenosidimutans An et al. 2011

@ref: 15531

domain: Bacteria

phylum: Actinobacteria

class: Thermoleophilia

order: Solirubrobacterales

family: Solirubrobacteraceae

genus: Solirubrobacter

species: Solirubrobacter ginsenosidimutans

full scientific name: Solirubrobacter ginsenosidimutans An et al. 2011

strain designation: BXN5-15

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69288Ivory (1014), Light ivory (1015)ISP 2
69288Khaki grey (7008)ISP 3
69288Light ivory (1015)suter with tyrosine
69288Pastel yellow (1034)suter without tyrosine

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69288noAerial myceliumISP 2
69288noAerial myceliumISP 3
69288noAerial myceliumsuter with tyrosine
69288noAerial myceliumsuter without tyrosine

pigmentation

@refproductionname
69288noMelanin
69288nosoluble pigment

multimedia

@refmultimedia contentcaptionintellectual property rights
69288DSM_21036_image3.jpegPlates (830, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69288DSM_21036_image4.jpegPlates (830, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

  • @ref: 15531
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperature
15531positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-7(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6928822599arabinose-growth
6928862968cellulose-growth
6928828757fructose-growth
6928817234glucose-growth
6928817268inositol-growth
6928837684mannose-growth
6928816634raffinose-growth
6928826546rhamnose-growth
6928817992sucrose-growth
6928818222xylose-growth
6837917632nitrate-reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382esterase (C 4)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69288-------------------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69288+/-++/--++/----++/----+----

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
15531soil of ginseng fieldBaekdu MountainChinaCHNAsia
67770Soil of a ginseng field on Baekdu MountainChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_13251.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_373;96_1692;97_2026;98_10036;99_13251&stattab=map
  • Last taxonomy: Solirubrobacter
  • 16S sequence: EU332825
  • Sequence Identity:
  • Total samples: 1600
  • soil counts: 1154
  • aquatic counts: 27
  • animal counts: 42
  • plant counts: 377

Safety information

risk assessment

  • @ref: 15531
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 15531
  • description: Solirubrobacter ginsenosidimutans strain BXN5-15 16S ribosomal RNA gene, partial sequence
  • accession: EU332825
  • length: 1489
  • database: nuccore
  • NCBI tax ID: 490573

GC content

  • @ref: 15531
  • GC-content: 70.6
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 15531

culture collection no.: DSM 21036, KACC 20671, LMG 24459, JCM 19086, NBRC 109969

straininfo link

  • @ref: 83257
  • straininfo: 399603

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21148679Solirubrobacter ginsenosidimutans sp. nov., isolated from soil of a ginseng field.An DS, Wang L, Kim MS, Bae HM, Lee ST, Im WTInt J Syst Evol Microbiol10.1099/ijs.0.028431-02010Actinobacteria/*classification/genetics/*isolation & purification/metabolism, Base Composition, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Ginsenosides/metabolism, Molecular Sequence Data, Panax/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil MicrobiologyMetabolism
Phylogeny24254741Solirubrobacter phytolaccae sp. nov., an endophytic bacterium isolated from roots of Phytolacca acinosa Roxb.Wei L, Ouyang S, Wang Y, Shen X, Zhang LInt J Syst Evol Microbiol10.1099/ijs.0.057554-02013Actinobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Phytolacca/*microbiology, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics

Reference

@idauthorscataloguedoi/urltitle
15531Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21036)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21036
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69288Wink, J.https://cdn.dsmz.de/wink/DSM%2021036.pdfCompendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
83257Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID399603.1StrainInfo: A central database for resolving microbial strain identifiers